Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   R4V96_RS14670 Genome accession   NZ_CP137162
Coordinates   2977680..2978309 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain YA-1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2972680..2983309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4V96_RS14655 (R4V96_14650) helD 2972922..2974976 (-) 2055 WP_407345974.1 DNA helicase IV -
  R4V96_RS14660 (R4V96_14655) yccF 2975099..2975545 (+) 447 WP_001261235.1 YccF domain-containing protein -
  R4V96_RS14665 (R4V96_14660) yccS 2975555..2977717 (+) 2163 WP_000875044.1 YccS family putative transporter -
  R4V96_RS14670 (R4V96_14665) sxy/tfoX 2977680..2978309 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  R4V96_RS14675 (R4V96_14670) sulA 2978528..2979037 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  R4V96_RS14680 (R4V96_14675) ompA 2979394..2980446 (+) 1053 WP_000750419.1 porin OmpA -
  R4V96_RS14685 (R4V96_14680) matP 2980521..2980973 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  R4V96_RS14690 (R4V96_14685) ycbZ 2981159..2982919 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=820492 R4V96_RS14670 WP_000839153.1 2977680..2978309(-) (sxy/tfoX) [Escherichia coli strain YA-1]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=820492 R4V96_RS14670 WP_000839153.1 2977680..2978309(-) (sxy/tfoX) [Escherichia coli strain YA-1]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGCTCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1