Detailed information NTG0820452

Bioinformatically predicted

Overview

• Name: amiE
• Type: Regulator
• Locus tag: R4V96_RS00875
• Genome accession: NZ_CP137162
• Coordinates: 182510..183493 (+)
• Length: 327 a.a.
• NCBI ID: WP_001196496.1
• Uniprot ID: Q3YVS2
• Organism: Escherichia coli strain YA-1
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 177510..188493

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R4V96_RS00860 (R4V96_00850)	dppA	178810..180417 (+)	1608	WP_001222883.1	dipeptide ABC transporter substrate-binding protein DppA	-
R4V96_RS00865 (R4V96_00855)	dppB	180568..181587 (+)	1020	WP_000938855.1	dipeptide ABC transporter permease DppB	-
R4V96_RS00870 (R4V96_00860)	dppC	181597..182499 (+)	903	WP_000084677.1	dipeptide ABC transporter permease DppC	-
R4V96_RS00875 (R4V96_00865)	amiE	182510..183493 (+)	984	WP_001196496.1	dipeptide ABC transporter ATP-binding protein	Regulator
R4V96_RS00880 (R4V96_00870)	dppF	183490..184494 (+)	1005	WP_032256837.1	dipeptide ABC transporter ATP-binding subunit DppF	-
R4V96_RS00885 (R4V96_00875)	yhjV	184524..185795 (-)	1272	WP_001295225.1	aromatic amino acid transport family protein	-
R4V96_RS00890 (R4V96_00880)	-	186271..186378 (+)	108	WP_001295224.1	type I toxin-antitoxin system toxin Ldr family protein	-
R4V96_RS00895 (R4V96_00885)	-	186754..186861 (+)	108	WP_001295224.1	type I toxin-antitoxin system toxin Ldr family protein	-
R4V96_RS00900 (R4V96_00890)	-	187237..187344 (+)	108	WP_001295224.1	type I toxin-antitoxin system toxin Ldr family protein	-

Sequence

Protein

• Length: 327 a.a.
• Molecular weight: 35814.38 Da
• Isoelectric Point: 6.7584

>NTDB_id=820452 R4V96_RS00875 WP_001196496.1 182510..183493(+) (amiE) [Escherichia coli strain YA-1]
MALLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLVFNGQDLQRISE
KERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKSTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQ
RVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGDAHA
IFHAPRHPYTQALLRALPEFAQDKERLASLPGVVPGKYDRPNGCLLNPRCPYATDRCRAEEPALNMLADGRQSKCHYPLD
DAGRPTL

Nucleotide

• Length: 984 bp

>NTDB_id=820452 R4V96_RS00875 WP_001196496.1 182510..183493(+) (amiE) [Escherichia coli strain YA-1]
ATGGCGTTATTAAATGTAGATAAATTATCGGTGCATTTCGGCGACGAAAGCGCACCGTTCCGCGCCGTAGACCGCATCAG
CTACAGCGTAAAACAGGGCGAAGTGGTCGGGATTGTGGGTGAGTCTGGCTCCGGTAAGTCGGTCAGTTCACTGGCGATTA
TGGGGCTGATTGATTATCCGGGCCGCGTAATGGCGGAAAAGCTGGTGTTTAACGGTCAGGATTTGCAGCGTATATCAGAA
AAAGAGCGCCGCAACCTGGTGGGTGCCGAAGTGGCGATGATCTTCCAGGACCCGATGACCAGCCTTAACCCGTGCTACAC
CGTGGGTTTCCAGATCATGGAAGCGATTAAGGTGCATCAGGGCGGTAATAAGAGCACTCGCCGTCAGCGGGCGATTGACC
TGCTGAATCAGGTCGGTATTCCCGATCCGGCATCGCGTCTGGATGTTTACCCGCATCAGCTTTCCGGCGGCATGAGCCAG
CGCGTGATGATCGCCATGGCGATTGCCTGTCGGCCAAAACTGCTGATTGCCGATGAACCGACCACCGCGCTGGACGTGAC
CATTCAGGCGCAAATCATCGAACTACTGCTGGAGCTACAGCAGAAAGAGAACATGGCGCTGGTGTTAATTACCCATGACC
TGGCGCTGGTGGCGGAAGCGGCACATAAAATCATCGTGATGTATGCAGGCCAGGTGGTGGAAACCGGTGATGCGCACGCC
ATCTTCCATGCGCCGCGTCACCCGTATACTCAGGCATTGCTGCGTGCGCTGCCAGAATTTGCTCAGGACAAAGAACGTCT
GGCGTCGTTGCCAGGTGTCGTTCCCGGCAAGTACGACCGCCCGAACGGCTGCCTGCTTAACCCGCGCTGCCCCTATGCCA
CTGACAGATGTCGCGCTGAAGAACCGGCGCTGAATATGCTCGCTGACGGGCGTCAGTCCAAATGCCATTACCCACTTGAT
GATGCCGGGAGGCCGACACTATGA

Domains

Predicted by InterProScan.

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (233-297)

• ABC transporter (ABC_tran) (24-181)

3D structure

• AlphaFold DB: Q3YVS2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiE	Streptococcus salivarius strain HSISS4	43.302	98.165	0.425
amiE	Streptococcus thermophilus LMG 18311	42.991	98.165	0.422
amiE	Streptococcus thermophilus LMD-9	42.991	98.165	0.422
oppD	Streptococcus mutans UA159	41.066	97.554	0.401