Detailed information NTG0820370

Bioinformatically predicted

Overview

• Name: recQ
• Type: Machinery gene
• Locus tag: R4540_RS12610
• Genome accession: NZ_CP137135
• Coordinates: 2763783..2765618 (+)
• Length: 611 a.a.
• NCBI ID: WP_001918120.1
• Uniprot ID: -
• Organism: Vibrio cholerae V52
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2758783..2770618

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R4540_RS12590 (R4540_12585)	-	2759083..2759751 (-)	669	WP_001004599.1	LysE family translocator	-
R4540_RS12595 (R4540_12590)	-	2759826..2760629 (-)	804	WP_000381934.1	AraC family transcriptional regulator	-
R4540_RS12600 (R4540_12595)	ggt	2760786..2762540 (-)	1755	WP_001104638.1	gamma-glutamyltransferase	-
R4540_RS12605 (R4540_12600)	rarD	2762714..2763556 (-)	843	WP_001889839.1	EamA family transporter RarD	-
R4540_RS12610 (R4540_12605)	recQ	2763783..2765618 (+)	1836	WP_001918120.1	ATP-dependent DNA helicase RecQ	Machinery gene
R4540_RS12615 (R4540_12610)	-	2765611..2765910 (+)	300	WP_000807263.1	DUF3630 family protein	-
R4540_RS12620 (R4540_12615)	-	2766081..2766443 (+)	363	WP_001235441.1	hypothetical protein	-
R4540_RS12625 (R4540_12620)	-	2766479..2768308 (-)	1830	WP_000488008.1	ABC transporter ATP-binding protein	-
R4540_RS12630 (R4540_12625)	fhuA	2768443..2770542 (+)	2100	WP_001244551.1	TonB-dependent siderophore receptor FhuA	-

Sequence

Protein

• Length: 611 a.a.
• Molecular weight: 69128.42 Da
• Isoelectric Point: 7.1164

>NTDB_id=820370 R4540_RS12610 WP_001918120.1 2763783..2765618(+) (recQ) [Vibrio cholerae V52]
MTATLMAESSALFATPERVLHEVFGYQQFRVGQQEVIEAALAGRDSLVIMPTGGGKSLCYQIPALVLEGVTLVISPLISL
MKDQVDQLKANGVAAECVNSTLAREELIAIYNRMHAGQLKLLYVSPERVLTAEFIERLSHLPLAMIAVDEAHCISQWGHD
FRPEYASLGQLKQRFPNVPVMALTATADDATRHDIMQRLQLNEPHQYLGSFDRPNIRYMLVEKHKPVSQVIRYLETQRGQ
CGIIYCGSRKKVEMLTEKLCGNHIRAASYHAGMDADERAWVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNI
ESYYQETGRAGRDGLPAEAMMLYDPADMNWLRRMLDEKPDGAQKQVESHKLTAMGAFAEAQTCRRQVLLNYFGEYRDKPC
GNCDICLDPPKRFDATEEARKALSCVYRVNQNFGIGYVVEVLRGMQNIRIREHGHDKITTYGIGRDHSHDYWVSIFRQLI
HKGMLYQNITRNSTLQLTEEARPLLRGEMNIELAVPRLDTAARAAKSDKLSGKNYDKKLFAKLRKLRKSIADDEGLPPYV
VFSDATLIDMAEIMPTSYGEMLAVNGVGQRKLEKYADPFLDLIQEHLTYHG

Nucleotide

• Length: 1836 bp

>NTDB_id=820370 R4540_RS12610 WP_001918120.1 2763783..2765618(+) (recQ) [Vibrio cholerae V52]
ATGACCGCGACTTTAATGGCTGAATCTTCTGCTCTCTTTGCCACTCCTGAACGTGTTTTGCACGAGGTGTTTGGCTATCA
GCAATTTCGCGTCGGTCAGCAAGAGGTGATTGAGGCGGCGCTGGCTGGGCGTGATAGCTTGGTCATTATGCCGACTGGCG
GTGGTAAATCGCTCTGTTACCAGATCCCTGCACTGGTGCTGGAAGGGGTCACGTTAGTGATTTCTCCCCTGATTTCGCTG
ATGAAAGATCAGGTTGACCAGCTTAAAGCCAACGGTGTCGCCGCCGAGTGTGTCAATTCCACCTTGGCGCGCGAGGAACT
GATCGCGATTTATAACCGCATGCATGCTGGCCAGCTCAAGCTGCTGTATGTGTCGCCAGAGCGGGTATTGACCGCCGAGT
TTATCGAACGGCTCAGCCATCTGCCGTTAGCCATGATTGCGGTTGATGAAGCGCACTGTATTTCGCAATGGGGACACGAT
TTTCGTCCTGAATACGCCTCATTAGGCCAGCTTAAGCAGCGTTTCCCGAATGTGCCAGTGATGGCGCTGACGGCGACTGC
GGATGACGCGACCCGTCACGATATCATGCAGCGTTTGCAGCTCAATGAGCCGCATCAGTATCTGGGCAGCTTTGATCGCC
CGAACATTCGCTACATGCTGGTGGAAAAACATAAGCCGGTTTCACAAGTGATTCGTTATCTGGAAACTCAGCGCGGGCAG
TGCGGCATCATCTATTGTGGCAGCCGTAAAAAAGTGGAAATGCTCACTGAAAAGCTGTGCGGCAACCACATTCGCGCCGC
CAGTTACCATGCAGGGATGGATGCCGATGAGCGCGCTTGGGTGCAAGAAGCGTTTCAGCGTGATGACCTGCAAATTGTGG
TGGCGACCGTGGCGTTTGGCATGGGGATTAATAAACCCAACGTGCGCTTTGTGGTGCATTTTGATATTCCACGCAACATT
GAATCCTACTATCAGGAAACTGGTCGCGCAGGGCGTGATGGTTTGCCTGCTGAAGCCATGATGCTGTACGACCCTGCCGA
CATGAACTGGCTGCGCCGTATGCTCGATGAAAAGCCCGATGGCGCGCAAAAACAGGTTGAAAGCCACAAGCTCACCGCCA
TGGGCGCGTTTGCTGAAGCGCAAACTTGTCGCCGCCAAGTATTGCTCAATTATTTTGGCGAATATCGCGATAAGCCATGT
GGTAACTGCGATATCTGCCTCGACCCGCCCAAGCGTTTTGATGCCACGGAAGAGGCGCGCAAAGCCTTGTCGTGTGTCTA
TCGCGTCAATCAAAACTTCGGGATTGGCTATGTGGTGGAAGTGTTGCGCGGCATGCAAAACATCCGCATTCGCGAACATG
GTCACGACAAAATTACCACTTATGGGATTGGCCGCGATCACAGCCACGATTACTGGGTGAGTATTTTCCGCCAACTGATC
CACAAAGGCATGCTCTACCAAAACATCACGCGCAACTCGACATTGCAACTGACCGAAGAAGCTCGCCCTTTGCTGCGCGG
TGAAATGAATATTGAGCTGGCGGTACCGCGTTTAGATACCGCGGCGCGCGCGGCGAAATCCGACAAATTGTCGGGCAAAA
ACTACGACAAAAAACTGTTTGCCAAACTGCGTAAGCTGCGTAAATCGATCGCCGATGACGAAGGGTTACCACCGTATGTG
GTGTTCAGTGACGCCACCTTGATTGATATGGCGGAGATCATGCCAACCTCTTATGGCGAAATGTTGGCGGTGAATGGGGT
TGGGCAGCGCAAGCTGGAAAAATACGCCGACCCGTTTTTGGATCTGATTCAGGAGCATTTGACCTATCATGGCTGA

Domains

Predicted by InterProScan.

• RecQ zinc-binding (RecQ_Zn_bind) (346-407)

• Helicase conserved C-terminal domain (Helicase_C) (229-333)

• HRDC domain (HRDC) (537-603)

• RQC domain (RQC) (409-517)

• DEAD/DEAH box helicase (DEAD) (33-188)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recQ	Bacillus subtilis subsp. subtilis str. 168	40.641	97.054	0.394