Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   QEG98_RS06875 Genome accession   NZ_CP123278
Coordinates   1452286..1453653 (-) Length   455 a.a.
NCBI ID   WP_090484787.1    Uniprot ID   A0AA97B8U7
Organism   Myxococcus sp. MxC21-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1447286..1458653
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QEG98_RS06855 (QEG98_06990) - 1448086..1449000 (+) 915 WP_316566148.1 hypothetical protein -
  QEG98_RS06860 (QEG98_06995) - 1448913..1449875 (+) 963 WP_316566149.1 methyl-accepting chemotaxis protein -
  QEG98_RS06865 (QEG98_07000) - 1449859..1451349 (-) 1491 Protein_1357 ATP-binding protein -
  QEG98_RS06870 (QEG98_07005) - 1451658..1452203 (+) 546 WP_316566150.1 dihydrofolate reductase family protein -
  QEG98_RS06875 (QEG98_07010) radA 1452286..1453653 (-) 1368 WP_090484787.1 DNA repair protein RadA Machinery gene
  QEG98_RS06880 (QEG98_07015) - 1453837..1454106 (+) 270 WP_090484785.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  QEG98_RS06885 (QEG98_07020) bioB 1454246..1455286 (+) 1041 WP_011551374.1 biotin synthase BioB -
  QEG98_RS06890 (QEG98_07025) bioF 1455294..1456468 (+) 1175 Protein_1362 8-amino-7-oxononanoate synthase -
  QEG98_RS06895 (QEG98_07030) bioD 1456461..1457144 (+) 684 WP_316566151.1 dethiobiotin synthase -
  QEG98_RS06900 (QEG98_07035) - 1457277..1457555 (+) 279 WP_090486935.1 hypothetical protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48312.74 Da        Isoelectric Point: 7.6453

>NTDB_id=820327 QEG98_RS06875 WP_090484787.1 1452286..1453653(-) (radA) [Myxococcus sp. MxC21-1]
MAKAKTHYTCQACGYKTAKWLGKCPDCGAWSSLLEETDPKADERRPAWGASGGSARPMLLKEVSGETETRRRTGIAEFDR
VLGGGVVSGSIVLLGGDPGIGKSTLLLAALDRLARHGPVLYVSGEESLRQTKMRAERLRVEGDAIHLFAETDAERVLTAT
EALKPQALVVDSIQTMYLPELGNAPGSITQVREVAGRLMAYAKRTGVPTFLVGHVTKEGSIAGPRVLEHMVDTVLYFEGE
RGHPFRILRAHKNRFGSTNEIGVFEMKGAGLVEVSDPSALFLSERPVGKSGSVVTSTLNGTRPLLVEVQALVAPTGYGTA
RRTAIGVDGNRVALLAAVLEKKEEIPLVGCDLFVNVAGGMQLTEPACDLAVCAALVSSLQNRPLDPKTLVLGEVGLAGEV
RAVGQVEPRLAEAAKMGFQRVVLPAGSARRLEDAGPKMKIVGVETLGDALVAMFD

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=820327 QEG98_RS06875 WP_090484787.1 1452286..1453653(-) (radA) [Myxococcus sp. MxC21-1]
ATGGCGAAGGCGAAGACGCACTACACCTGTCAGGCGTGTGGATACAAAACGGCGAAGTGGCTCGGGAAGTGTCCGGACTG
TGGCGCGTGGAGCTCCCTGCTGGAGGAGACGGACCCGAAGGCGGATGAGCGACGTCCGGCCTGGGGTGCCTCGGGCGGTT
CGGCGCGGCCCATGCTGCTCAAGGAAGTGAGCGGCGAGACGGAGACGCGCCGGCGCACAGGCATCGCCGAGTTCGACCGC
GTGCTGGGCGGCGGCGTGGTGAGTGGGTCCATCGTGCTGCTGGGTGGCGATCCGGGCATCGGCAAGTCCACGCTGCTGCT
GGCGGCGTTGGACAGGCTGGCGCGTCACGGACCGGTGCTCTACGTCTCCGGTGAAGAGAGCCTGCGACAGACGAAGATGC
GCGCCGAGCGGCTCCGGGTGGAGGGAGACGCCATCCACCTGTTCGCGGAGACGGACGCGGAGCGGGTGCTGACGGCAACG
GAGGCATTGAAGCCCCAGGCGCTGGTGGTGGACTCCATCCAGACCATGTACCTGCCGGAGCTGGGCAACGCGCCCGGCAG
CATCACCCAGGTGCGCGAGGTGGCGGGCCGGCTGATGGCATACGCGAAGCGCACGGGGGTGCCCACGTTCCTGGTGGGCC
ACGTGACGAAGGAAGGTTCCATCGCGGGCCCGCGCGTGCTGGAGCACATGGTGGACACGGTCCTCTACTTCGAGGGCGAG
CGGGGCCACCCGTTCCGAATCCTGCGCGCGCACAAGAACCGCTTCGGCTCCACGAACGAGATTGGCGTTTTCGAGATGAA
GGGCGCGGGGCTGGTGGAGGTGTCGGACCCGTCCGCCCTCTTCCTGTCGGAGCGGCCGGTGGGCAAGTCCGGCAGCGTGG
TGACGAGCACGCTGAACGGCACGCGCCCACTGCTGGTGGAGGTGCAGGCGCTGGTGGCGCCCACGGGCTACGGCACCGCG
CGGCGCACGGCGATTGGCGTGGACGGCAACCGCGTGGCGCTGCTGGCGGCGGTGCTGGAGAAGAAGGAGGAGATTCCGCT
GGTGGGCTGTGACTTGTTCGTCAACGTGGCGGGCGGCATGCAGCTCACGGAGCCGGCGTGTGACCTCGCGGTGTGCGCGG
CGCTGGTGAGCAGCCTCCAAAACCGGCCGTTGGACCCGAAGACGCTGGTGCTCGGCGAAGTGGGCCTCGCCGGAGAGGTG
CGCGCGGTGGGACAGGTGGAGCCGCGACTGGCGGAGGCCGCGAAGATGGGCTTCCAGCGCGTGGTGCTGCCCGCGGGCAG
CGCGCGGCGGCTCGAAGACGCCGGTCCGAAGATGAAGATTGTCGGCGTGGAGACGCTCGGCGACGCGCTCGTCGCGATGT
TCGACTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-33)

Subunit ChlI of Mg-chelatase (ChlI)

(351-425)

AAA domain (AAA_25)

(81-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

53.187

100

0.532
  radA Streptococcus mitis SK321

51.974

100

0.521
  radA Streptococcus mitis NCTC 12261

51.868

100

0.519
  radA Streptococcus pneumoniae TIGR4

51.648

100

0.516
  radA Streptococcus pneumoniae Rx1

51.648

100

0.516
  radA Streptococcus pneumoniae D39

51.648

100

0.516
  radA Streptococcus pneumoniae R6

51.648

100

0.516