Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   R8566_RS00455 Genome accession   NZ_AP026920
Coordinates   76459..77229 (+) Length   256 a.a.
NCBI ID   WP_000616164.1    Uniprot ID   Q97TA7
Organism   Streptococcus pneumoniae strain PZ900700014     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 71459..82229
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8566_RS00435 (PC0014_00800) - 73244..73681 (+) 438 WP_000076487.1 CoA-binding protein -
  R8566_RS00440 (PC0014_00810) - 73722..74105 (+) 384 WP_000692966.1 hypothetical protein -
  R8566_RS00445 (PC0014_00820) - 74134..75144 (-) 1011 WP_000009168.1 YeiH family protein -
  R8566_RS00450 (PC0014_00830) - 75293..76462 (+) 1170 WP_000366342.1 pyridoxal phosphate-dependent aminotransferase -
  R8566_RS00455 (PC0014_00840) recO 76459..77229 (+) 771 WP_000616164.1 DNA repair protein RecO Machinery gene
  R8566_RS00460 (PC0014_00850) plsX 77226..78218 (+) 993 WP_000717462.1 phosphate acyltransferase PlsX -
  R8566_RS00465 (PC0014_00860) - 78224..78457 (+) 234 WP_000136447.1 acyl carrier protein -
  R8566_RS00470 (PC0014_00870) - 78494..78793 (+) 300 Protein_86 transposase -
  R8566_RS00475 (PC0014_00880) blpU 78996..79226 (+) 231 WP_001093077.1 bacteriocin-like peptide BlpU -
  R8566_RS00480 - 79229..79354 (+) 126 WP_001817770.1 PncF family bacteriocin immunity protein -
  R8566_RS00485 (PC0014_00890) comA 79941..82094 (+) 2154 WP_000668303.1 peptide cleavage/export ABC transporter ComA Regulator

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29787.35 Da        Isoelectric Point: 5.8959

>NTDB_id=82032 R8566_RS00455 WP_000616164.1 76459..77229(+) (recO) [Streptococcus pneumoniae strain PZ900700014]
MIQSITSQGLVLYNRNFREDDKLVKIFTEQVGKRMFFVKHAGQSKLAPVIQPLVLARFLLRINDDGLSYIEDYHEVMTFP
KINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLQKTLELMEAGLDYQVLTNIFEIQILTRFGISLNFNECVFCHRVG
QAFDFSFKYGACLCPEHYHEDKRRCHLNPNIPYLLNQFQAIDFETLETISLKPGIKQELRQFMDQLYEEYVGIHLKSKKF
IDSLADWGQLLKEEKK

Nucleotide


Download         Length: 771 bp        

>NTDB_id=82032 R8566_RS00455 WP_000616164.1 76459..77229(+) (recO) [Streptococcus pneumoniae strain PZ900700014]
ATGATTCAGTCTATCACGAGTCAAGGCTTGGTGCTTTACAATCGCAATTTTCGTGAGGATGACAAGCTCGTCAAAATTTT
TACAGAGCAGGTTGGCAAACGCATGTTTTTTGTCAAACACGCTGGTCAGTCTAAGCTGGCGCCTGTTATTCAGCCCTTGG
TGCTGGCACGATTTCTATTGCGAATCAATGATGACGGACTCAGTTACATCGAAGACTATCATGAGGTCATGACTTTTCCC
AAGATTAATAGTGACCTCTTTGTCATGGCCTATGCGACCTATGTGGCAGCTCTTGCAGATGCTAGTTTGCAGGACAATCA
GCAGGATGCTCCCTTGTTTGCTTTTTTGCAAAAGACTTTGGAGTTGATGGAAGCAGGCTTGGATTATCAGGTTTTGACCA
ATATTTTTGAAATTCAAATTTTGACTCGATTTGGAATCAGCCTCAATTTTAATGAGTGTGTCTTCTGCCATCGGGTTGGT
CAGGCTTTTGACTTTTCTTTCAAATATGGAGCCTGCCTCTGTCCAGAGCATTATCATGAGGATAAGAGACGTTGTCATCT
CAATCCCAATATCCCCTATCTGCTCAATCAATTTCAAGCTATTGATTTTGAGACTTTGGAGACCATTTCGCTCAAGCCTG
GAATCAAGCAAGAGCTACGCCAATTTATGGATCAACTATATGAAGAGTACGTTGGGATTCACCTAAAATCAAAGAAATTT
ATTGATTCCCTAGCAGACTGGGGACAATTACTAAAAGAGGAAAAGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(84-238)

Recombination protein O N terminal (RecO_N)

(4-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q97TA7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

99.219

100

0.992

Multiple sequence alignment