Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   R4705_RS08045 Genome accession   NZ_CP137115
Coordinates   1528410..1528676 (+) Length   88 a.a.
NCBI ID   WP_001808618.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 20614-6     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1523410..1533676
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4705_RS08025 - 1523673..1524182 (+) 510 WP_000619952.1 GNAT family N-acetyltransferase -
  R4705_RS08030 pheT 1524259..1526664 (+) 2406 WP_317815560.1 phenylalanine--tRNA ligase subunit beta -
  R4705_RS08035 - 1526732..1527733 (-) 1002 WP_000597980.1 endonuclease/exonuclease/phosphatase family protein -
  R4705_RS08040 - 1527881..1528284 (+) 404 Protein_1538 helix-turn-helix domain-containing protein -
  R4705_RS08045 HI0659 1528410..1528676 (+) 267 WP_001808618.1 helix-turn-helix domain-containing protein Machinery gene
  R4705_RS08050 metE 1528937..1531186 (+) 2250 WP_000108202.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  R4705_RS08055 metF 1531250..1532116 (+) 867 WP_000089968.1 methylenetetrahydrofolate reductase [NAD(P)H] -
  R4705_RS10840 - 1532298..1532567 (-) 270 WP_001808932.1 hypothetical protein -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 9622.15 Da        Isoelectric Point: 4.4893

>NTDB_id=820269 R4705_RS08045 WP_001808618.1 1528410..1528676(+) (HI0659) [Streptococcus pneumoniae strain 20614-6]
MEGCPSELFSKEEILESDMRVAIMSELIEARYEQGISQKKLEEVSGISQPVIARMETGKTSPQLDTVLKVLASLGKTLAI
VPLEQGKS

Nucleotide


Download         Length: 267 bp        

>NTDB_id=820269 R4705_RS08045 WP_001808618.1 1528410..1528676(+) (HI0659) [Streptococcus pneumoniae strain 20614-6]
TTGGAAGGATGTCCATCTGAGCTCTTTAGCAAGGAGGAAATCCTTGAAAGTGATATGCGAGTGGCTATCATGAGCGAGTT
GATTGAGGCTAGGTATGAACAAGGAATCAGTCAGAAAAAGCTGGAAGAAGTCAGTGGAATAAGCCAGCCTGTCATAGCTA
GGATGGAGACAGGAAAGACTAGTCCTCAGTTGGATACAGTCTTAAAAGTCCTAGCCAGTTTAGGAAAGACACTAGCAATC
GTCCCACTTGAACAGGGAAAAAGTTGA

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(29-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

61.039

87.5

0.534