Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   R4705_RS05670 Genome accession   NZ_CP137115
Coordinates   1072128..1072898 (+) Length   256 a.a.
NCBI ID   WP_000616164.1    Uniprot ID   Q97TA7
Organism   Streptococcus pneumoniae strain 20614-6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1067128..1077898
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4705_RS05650 - 1069003..1069440 (+) 438 WP_000076479.1 CoA-binding protein -
  R4705_RS05655 - 1069481..1069774 (+) 294 WP_000693131.1 hypothetical protein -
  R4705_RS05660 - 1069803..1070813 (-) 1011 WP_000009158.1 YeiH family protein -
  R4705_RS05665 - 1070962..1072131 (+) 1170 WP_279513686.1 pyridoxal phosphate-dependent aminotransferase -
  R4705_RS05670 recO 1072128..1072898 (+) 771 WP_000616164.1 DNA repair protein RecO Machinery gene
  R4705_RS05675 plsX 1072895..1073887 (+) 993 WP_000717458.1 phosphate acyltransferase PlsX -
  R4705_RS05680 - 1073893..1074126 (+) 234 WP_000136447.1 acyl carrier protein -
  R4705_RS05685 - 1074163..1074462 (+) 300 Protein_1068 transposase family protein -
  R4705_RS05690 blpU 1074665..1074895 (+) 231 WP_001093075.1 bacteriocin-like peptide BlpU -
  R4705_RS05695 - 1074898..1075023 (+) 126 WP_000346297.1 PncF family bacteriocin immunity protein -
  R4705_RS05700 comA 1075610..1077763 (+) 2154 WP_000668277.1 peptide cleavage/export ABC transporter ComA Regulator

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29787.35 Da        Isoelectric Point: 5.8959

>NTDB_id=820246 R4705_RS05670 WP_000616164.1 1072128..1072898(+) (recO) [Streptococcus pneumoniae strain 20614-6]
MIQSITSQGLVLYNRNFREDDKLVKIFTEQVGKRMFFVKHAGQSKLAPVIQPLVLARFLLRINDDGLSYIEDYHEVMTFP
KINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLQKTLELMEAGLDYQVLTNIFEIQILTRFGISLNFNECVFCHRVG
QAFDFSFKYGACLCPEHYHEDKRRCHLNPNIPYLLNQFQAIDFETLETISLKPGIKQELRQFMDQLYEEYVGIHLKSKKF
IDSLADWGQLLKEEKK

Nucleotide


Download         Length: 771 bp        

>NTDB_id=820246 R4705_RS05670 WP_000616164.1 1072128..1072898(+) (recO) [Streptococcus pneumoniae strain 20614-6]
ATGATTCAGTCTATCACGAGTCAAGGCTTGGTGCTTTACAATCGCAATTTTCGTGAGGATGACAAGCTCGTCAAAATTTT
TACAGAGCAGGTTGGCAAACGCATGTTTTTTGTCAAACACGCTGGTCAGTCTAAGCTGGCGCCTGTTATTCAGCCCTTGG
TGCTGGCACGATTTCTCTTGCGAATCAATGATGACGGACTCAGTTACATCGAAGACTATCATGAGGTCATGACTTTTCCC
AAGATTAATAGTGACCTCTTTGTCATGGCCTATGCGACCTATGTGGCAGCTCTTGCAGATGCTAGTTTGCAGGACAATCA
GCAGGATGCTCCCTTGTTTGCTTTTTTGCAAAAGACTTTGGAGTTGATGGAAGCAGGCTTGGATTATCAGGTTTTGACCA
ATATTTTTGAAATTCAAATTTTGACTCGATTTGGAATCAGCCTCAATTTTAATGAGTGTGTCTTCTGCCATCGGGTTGGT
CAGGCTTTTGACTTTTCTTTCAAATATGGAGCCTGCCTCTGTCCAGAGCATTATCATGAGGATAAGAGACGTTGTCATCT
CAATCCCAATATCCCCTATCTGCTCAATCAATTTCAAGCTATTGATTTTGAGACTTTGGAGACCATTTCGCTCAAGCCTG
GAATCAAGCAAGAGCTACGCCAATTTATGGATCAATTATATGAAGAGTACGTTGGGATTCACCTAAAATCAAAGAAATTT
ATTGATTCCCTAGCAGACTGGGGACAATTACTAAAAGAGGAAAAGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(84-238)

Recombination protein O N terminal (RecO_N)

(4-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q97TA7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

99.219

100

0.992