Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   N4838_RS02625 Genome accession   NZ_CP123251
Coordinates   619427..619948 (+) Length   173 a.a.
NCBI ID   WP_094961402.1    Uniprot ID   -
Organism   Providencia rettgeri strain YZLc5-3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 614427..624948
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4838_RS02615 (N4838_002625) - 614842..616038 (+) 1197 WP_036958319.1 aromatic amino acid transaminase -
  N4838_RS02620 (N4838_002630) uvrA 616119..618953 (-) 2835 WP_004260897.1 excinuclease ABC subunit UvrA -
  N4838_RS02625 (N4838_002635) ssb 619427..619948 (+) 522 WP_094961402.1 single-stranded DNA-binding protein Machinery gene
  N4838_RS02630 (N4838_002640) - 620233..620640 (-) 408 WP_004260890.1 helix-turn-helix domain-containing protein -
  N4838_RS02635 (N4838_002645) - 620883..622055 (-) 1173 WP_004260887.1 MFS transporter -
  N4838_RS02640 (N4838_002650) ivbL 622388..622477 (+) 90 WP_099975407.1 ilvB operon leader peptide IvbL -
  N4838_RS02645 (N4838_002655) ilvB 622581..624278 (+) 1698 WP_094961401.1 acetolactate synthase large subunit -
  N4838_RS02650 (N4838_002660) ilvN 624281..624565 (+) 285 WP_004260877.1 acetolactate synthase small subunit -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18525.53 Da        Isoelectric Point: 4.9468

>NTDB_id=820245 N4838_RS02625 WP_094961402.1 619427..619948(+) (ssb) [Providencia rettgeri strain YZLc5-3]
MASRGVNKVILIGNLGQDPEIRYMPNGGAVANLTLATSESWRDKQTGEMREKTEWHRVVIFGKLAEVAGEYLKKGSQVYI
EGSLQTRKWQDQSGQDRYTTEVVVNIGGSMQMLGGRGGDAASQGQGGQGGWGQPQQPQAAQQFSGGGAPAARSSAPAPQT
NEPPMDFDDDIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=820245 N4838_RS02625 WP_094961402.1 619427..619948(+) (ssb) [Providencia rettgeri strain YZLc5-3]
ATGGCCAGCAGAGGCGTAAATAAAGTAATTCTTATCGGTAACCTAGGACAAGATCCAGAAATCCGTTATATGCCTAACGG
CGGAGCTGTGGCAAACCTGACTCTGGCAACTTCTGAAAGTTGGCGTGACAAGCAAACCGGTGAGATGCGTGAAAAAACCG
AATGGCACCGCGTGGTTATTTTCGGCAAATTAGCGGAAGTGGCAGGTGAATACCTGAAAAAAGGTTCACAAGTCTATATC
GAAGGTTCTCTGCAAACACGTAAATGGCAAGACCAAAGTGGTCAAGACCGTTACACGACAGAAGTTGTTGTGAATATCGG
CGGCTCAATGCAAATGCTAGGTGGCCGTGGCGGTGATGCAGCATCACAAGGTCAAGGCGGCCAAGGCGGTTGGGGCCAAC
CTCAACAGCCACAAGCAGCACAGCAATTTAGTGGTGGCGGAGCTCCAGCCGCACGCTCATCAGCACCTGCTCCACAAACT
AATGAACCACCAATGGATTTCGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

71.667

100

0.746
  ssb Glaesserella parasuis strain SC1401

57.143

100

0.624
  ssb Neisseria meningitidis MC58

47.458

100

0.486
  ssb Neisseria gonorrhoeae MS11

47.458

100

0.486