Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   R4705_RS03410 Genome accession   NZ_CP137115
Coordinates   650905..651864 (+) Length   319 a.a.
NCBI ID   WP_000777236.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 20614-6     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 645905..656864
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4705_RS03380 - 646107..646871 (-) 765 WP_000082875.1 nuclear transport factor 2 family protein -
  R4705_RS03385 - 646875..647318 (-) 444 WP_000655202.1 MarR family winged helix-turn-helix transcriptional regulator -
  R4705_RS03390 - 648000..648296 (-) 297 WP_000840140.1 bacteriocin immunity protein -
  R4705_RS03395 pepA 648318..649382 (-) 1065 WP_000209199.1 glutamyl aminopeptidase -
  R4705_RS03400 galE 649781..650482 (+) 702 WP_000167850.1 UDP-glucose 4-epimerase GalE -
  R4705_RS03405 - 650498..650608 (+) 111 WP_001108391.1 hypothetical protein -
  R4705_RS03410 ceuB 650905..651864 (+) 960 WP_000777236.1 ABC transporter permease Machinery gene
  R4705_RS03415 - 651854..652810 (+) 957 WP_001193668.1 iron chelate uptake ABC transporter family permease subunit -
  R4705_RS03420 - 652807..653559 (+) 753 WP_000764306.1 ABC transporter ATP-binding protein -
  R4705_RS03425 - 653655..654620 (+) 966 WP_000858260.1 siderophore ABC transporter substrate-binding protein -
  R4705_RS03430 yidD 654845..655087 (-) 243 WP_000821640.1 membrane protein insertion efficiency factor YidD -
  R4705_RS03435 - 655087..655809 (-) 723 WP_001222228.1 pseudouridine synthase -
  R4705_RS03440 scpB 655796..656365 (-) 570 WP_000105310.1 SMC-Scp complex subunit ScpB -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 35432.32 Da        Isoelectric Point: 9.7465

>NTDB_id=820200 R4705_RS03410 WP_000777236.1 650905..651864(+) (ceuB) [Streptococcus pneumoniae strain 20614-6]
MKLSHYLIGLLLLLVFLSISIGTSDFSWGKLFDFDQQTWLLFQESRLPRTISILLTASSMSMAGLLMQTITQNQFAAPST
VGTTEAAKLGMVLSLFVFPSASLTQKMLFAFISSIVFTLFFLAFMTIFTVKERWMLPLIGIIYSGIIGSVTEVIAYRFNL
VQSMTAWTQGSFSMIQTHQYEWLFLGLIILITVWKLSQTFTIMNLGKETSESLGISYSLLEKLALFLVALTTSVTMITVG
GLPFLGVIVPNLVRKRYGDNLSQTKLMVALVGANLVLACDILSRVLIRPYELSVSLLLGIIGSLVFILLLWRGGRKDAD

Nucleotide


Download         Length: 960 bp        

>NTDB_id=820200 R4705_RS03410 WP_000777236.1 650905..651864(+) (ceuB) [Streptococcus pneumoniae strain 20614-6]
ATGAAACTTTCTCATTATTTAATTGGCTTACTTCTACTCCTAGTCTTTCTCTCTATTAGCATTGGGACCAGTGATTTTTC
ATGGGGAAAGCTATTTGATTTCGACCAGCAGACCTGGCTCCTCTTTCAAGAGTCCCGTCTCCCAAGAACTATCAGTATTC
TCCTGACTGCCTCTAGTATGAGTATGGCAGGCCTTCTCATGCAGACTATTACCCAAAATCAGTTTGCTGCACCGAGTACA
GTTGGAACGACTGAAGCCGCCAAACTGGGGATGGTGCTGAGCCTTTTTGTCTTTCCATCGGCTAGTCTGACCCAAAAGAT
GCTCTTCGCTTTTATTTCATCCATCGTATTCACCCTCTTCTTCCTAGCCTTTATGACCATTTTTACTGTAAAGGAAAGGT
GGATGTTACCTCTGATTGGGATCATCTATAGCGGGATTATCGGCTCAGTCACAGAAGTTATCGCCTATCGTTTCAATCTG
GTTCAGAGTATGACTGCCTGGACCCAGGGCTCCTTCTCCATGATTCAGACCCATCAGTATGAGTGGCTCTTCTTAGGCCT
CATCATCCTGATAACCGTTTGGAAATTATCCCAAACCTTCACCATCATGAATCTAGGGAAAGAAACCAGCGAGAGTTTGG
GGATTTCCTACTCCCTACTTGAAAAACTGGCCCTCTTTCTGGTGGCGCTAACGACAAGCGTCACCATGATTACCGTGGGT
GGCCTACCATTTCTCGGAGTTATCGTTCCCAATCTTGTTCGCAAGCGCTATGGAGATAATCTAAGTCAAACCAAACTCAT
GGTCGCACTGGTTGGTGCCAATCTAGTTCTGGCTTGCGATATCCTATCCCGAGTTCTGATTAGGCCCTATGAGTTGTCTG
TCAGTCTCTTGCTAGGAATCATCGGTAGTCTCGTCTTTATCCTACTTCTCTGGAGAGGGGGACGAAAAGATGCAGACTAA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(10-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

37.097

97.179

0.361