Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   R4705_RS00475 Genome accession   NZ_CP137115
Coordinates   91902..93569 (-) Length   555 a.a.
NCBI ID   WP_000923573.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 20614-6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 86902..98569
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4705_RS00450 - 88039..88341 (-) 303 WP_000590580.1 PTS sugar transporter subunit IIB -
  R4705_RS00455 - 88379..88855 (-) 477 WP_000242193.1 PTS sugar transporter subunit IIA -
  R4705_RS00460 - 89037..89189 (+) 153 WP_001809205.1 hypothetical protein -
  R4705_RS00465 lepA 89270..91093 (-) 1824 WP_001047216.1 translation elongation factor 4 -
  R4705_RS00470 - 91172..91900 (-) 729 WP_000133335.1 metallophosphoesterase family protein -
  R4705_RS00475 recN 91902..93569 (-) 1668 WP_000923573.1 DNA repair protein RecN Machinery gene
  R4705_RS00480 - 93576..94007 (-) 432 WP_001034415.1 arginine repressor -
  R4705_RS00485 - 94000..94815 (-) 816 WP_001041074.1 TlyA family RNA methyltransferase -
  R4705_RS00490 - 94808..95683 (-) 876 WP_000743816.1 polyprenyl synthetase family protein -
  R4705_RS00495 - 95680..95892 (-) 213 WP_000043230.1 exodeoxyribonuclease VII small subunit -
  R4705_RS00500 xseA 95870..97210 (-) 1341 WP_000417492.1 exodeoxyribonuclease VII large subunit -
  R4705_RS00505 udk 97338..97976 (-) 639 WP_001181378.1 uridine kinase -
  R4705_RS00510 - 98084..98386 (-) 303 WP_000985087.1 bacteriocin immunity protein -

Sequence

Protein


Download         Length: 555 a.a.        Molecular weight: 62791.28 Da        Isoelectric Point: 4.7067

>NTDB_id=820176 R4705_RS00475 WP_000923573.1 91902..93569(-) (recN) [Streptococcus pneumoniae strain 20614-6]
MLLEISIKNFAIIEAISLNFEKGMTVLTGETGAGKSIIIDAMNMMLGARATTDVIRHGAPKAEIEGLFSVENSRLLQEIF
DEQGLELGDEIIIRREILQNGRSISRVNGQMVNLSVLRAIGQHLVDIHGQHDHEELMRPQLHIQMLDEFGDAAFWDLKET
YQTSFDAYRKMRKQVLEVKKNQQEHKARIEMLEFQMAEIEAANLQAGEDLALNQERDKLLNHKNIADTLTNAYSMLDNED
FSSLANVRSAMNDMESVEEYDPEYREISSSLSETYYVLEDISKRLEAIIEDLDFDGNRLMQVENRLDLLHTITRKYGGTV
DDVLLYFAKITEEYNLLTGNNLSSEDMEAELKKLEVNLVNLAGQLASARHNLAQQLEAEIKQELQDLYMEKAQFQVRFSK
GKFSREGNKMVEFYISTNPGEDFKPLVKVASGGELSRLMLAIKSAFSRKEGKTSIVFDEVDTGVSGRVAQAIAQKIHKIG
QHGQVLAISHLPQVIAIADYQFFIEKISNDHSTVSTVRLLTVEERVEEVAKMLAGDDVTEAALTQARELLRNREK

Nucleotide


Download         Length: 1668 bp        

>NTDB_id=820176 R4705_RS00475 WP_000923573.1 91902..93569(-) (recN) [Streptococcus pneumoniae strain 20614-6]
ATGTTACTTGAAATTTCGATAAAAAACTTTGCCATTATTGAGGCTATTTCCCTCAATTTTGAAAAGGGGATGACTGTCCT
GACTGGTGAAACGGGTGCAGGGAAGTCGATTATCATTGATGCCATGAATATGATGTTGGGAGCTCGTGCGACGACAGATG
TTATTCGTCATGGTGCACCAAAGGCAGAGATTGAGGGGCTTTTCTCAGTTGAGAATAGTCGTCTTTTACAGGAAATTTTT
GATGAGCAAGGTTTAGAATTAGGTGATGAAATTATCATCCGTCGGGAAATCTTGCAAAATGGTCGTAGTATCAGCCGTGT
AAATGGTCAGATGGTTAATCTGTCTGTTTTGCGAGCTATTGGGCAACATCTTGTAGATATTCATGGTCAGCATGACCATG
AGGAGTTAATGCGTCCCCAACTGCATATCCAGATGTTGGATGAATTTGGTGATGCCGCTTTTTGGGACTTGAAAGAAACC
TATCAAACGAGTTTTGATGCCTATCGGAAAATGCGCAAGCAGGTTCTGGAAGTCAAGAAAAACCAACAGGAACACAAGGC
ACGTATCGAAATGTTGGAATTTCAAATGGCAGAGATTGAGGCAGCAAACTTGCAGGCTGGAGAAGACTTGGCTCTCAATC
AAGAGCGAGATAAACTCCTCAACCACAAAAATATTGCGGATACACTGACCAATGCCTACAGTATGTTGGACAATGAAGAT
TTTTCAAGTCTGGCCAATGTTCGTTCAGCTATGAATGACATGGAAAGTGTCGAAGAGTATGATCCTGAATACCGTGAAAT
TTCAAGCTCTCTGTCTGAGACCTACTATGTTTTAGAAGACATTAGCAAACGTTTGGAAGCTATCATTGAGGACCTTGATT
TTGATGGCAATCGCCTGATGCAGGTTGAGAATCGTTTGGACCTCCTTCATACTATTACTCGTAAGTATGGTGGGACTGTT
GATGATGTTTTGCTTTATTTTGCCAAGATTACGGAAGAATACAATCTCTTGACAGGCAATAATCTTTCGTCTGAGGACAT
GGAAGCAGAGCTTAAGAAGTTGGAAGTCAATCTTGTCAATTTGGCAGGTCAACTTGCTTCTGCTCGTCATAATTTGGCTC
AGCAACTCGAAGCTGAGATTAAACAAGAACTGCAAGATCTTTATATGGAAAAAGCCCAGTTTCAGGTTCGTTTTAGTAAG
GGAAAATTCAGTCGTGAGGGAAATAAAATGGTTGAGTTTTATATTTCAACCAACCCTGGAGAAGACTTTAAACCCTTGGT
TAAGGTTGCTTCTGGAGGGGAATTATCTCGTCTCATGTTAGCCATTAAGTCTGCCTTTTCACGTAAAGAAGGCAAGACTA
GCATTGTCTTTGATGAGGTGGATACGGGAGTTTCAGGTCGTGTTGCTCAAGCTATTGCTCAGAAAATTCATAAAATTGGT
CAGCATGGTCAGGTTTTGGCTATCTCCCATTTGCCACAAGTAATTGCGATTGCAGATTATCAATTCTTTATTGAGAAGAT
TAGTAATGACCATTCAACGGTTTCGACTGTTCGTCTCTTGACGGTCGAAGAGCGAGTGGAGGAAGTTGCCAAGATGTTGG
CAGGTGATGATGTGACAGAAGCAGCCCTGACGCAAGCCAGAGAATTGTTGAGAAACAGGGAGAAATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

42.958

100

0.44