Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutX   Type   Machinery gene
Locus tag   R4705_RS00330 Genome accession   NZ_CP137115
Coordinates   64807..65271 (-) Length   154 a.a.
NCBI ID   WP_001135764.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 20614-6     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 59807..70271
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4705_RS00310 - 60758..61726 (-) 969 WP_050084209.1 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha -
  R4705_RS00315 pdrM 61880..63241 (-) 1362 WP_000278539.1 sodium-coupled multidrug efflux MATE transporter PdrM -
  R4705_RS00320 - 63252..63512 (-) 261 WP_001105925.1 hypothetical protein -
  R4705_RS00325 - 63526..64794 (-) 1269 WP_000924466.1 dihydroorotase -
  R4705_RS00330 mutX 64807..65271 (-) 465 WP_001135764.1 8-oxo-dGTP diphosphatase Machinery gene
  R4705_RS00335 - 65281..65934 (-) 654 WP_000401326.1 uracil-DNA glycosylase -
  R4705_RS00340 - 66070..66717 (-) 648 WP_001809355.1 hypothetical protein -
  R4705_RS00345 - 66731..67444 (-) 714 WP_000499429.1 YjjG family noncanonical pyrimidine nucleotidase -
  R4705_RS00350 dhaM 67903..68283 (-) 381 WP_000443784.1 dihydroxyacetone kinase phosphoryl donor subunit DhaM -
  R4705_RS00355 - 68283..68357 (-) 75 Protein_70 dihydroxyacetone kinase subunit L -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17786.12 Da        Isoelectric Point: 4.2287

>NTDB_id=820174 R4705_RS00330 WP_001135764.1 64807..65271(-) (mutX) [Streptococcus pneumoniae strain 20614-6]
MPQLATICYIDNGKELLMLHRNKKPNDVHEGKWIGVGGKLERGETPQECAAREILEETGLKAKPVLKGVITFPEFTADLD
WYTYVFKVTEFEGDLIDCNEGTLEWVPYDEVLSKPTWEGDHTFVEWLLEDKPFFSAKFVYDGDKLLDTQVDFYE

Nucleotide


Download         Length: 465 bp        

>NTDB_id=820174 R4705_RS00330 WP_001135764.1 64807..65271(-) (mutX) [Streptococcus pneumoniae strain 20614-6]
ATGCCTCAGTTAGCGACGATTTGCTACATTGATAATGGGAAAGAACTGCTCATGCTCCATCGTAATAAGAAACCCAATGA
TGTCCATGAAGGGAAATGGATTGGTGTGGGTGGTAAGCTAGAGAGAGGAGAGACGCCCCAAGAATGCGCGGCGCGTGAAA
TCCTTGAAGAAACAGGGCTCAAAGCCAAGCCAGTTCTAAAAGGTGTCATCACTTTTCCTGAATTTACAGCAGATTTAGAC
TGGTACACCTATGTTTTTAAGGTGACGGAGTTTGAGGGCGACTTGATTGACTGCAATGAGGGGACGCTAGAATGGGTTCC
CTATGACGAGGTTTTGAGCAAGCCGACTTGGGAAGGTGACCACACCTTTGTTGAGTGGCTTTTAGAGGATAAACCCTTCT
TTTCAGCCAAGTTTGTTTATGATGGGGATAAATTGTTGGATACCCAAGTTGATTTCTATGAATAA

Domains

Predicted by InterProScan.

NUDIX domain (NUDIX)

(2-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutX Streptococcus pneumoniae R6

98.052

100

0.981