Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   R4701_RS10220 Genome accession   NZ_CP137114
Coordinates   1982623..1984290 (+) Length   555 a.a.
NCBI ID   WP_000923583.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 15P3054     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1977623..1989290
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4701_RS10185 - 1977806..1978108 (+) 303 WP_000985089.1 bacteriocin immunity protein -
  R4701_RS10190 udk 1978216..1978854 (+) 639 WP_001181378.1 uridine kinase -
  R4701_RS10195 xseA 1978982..1980322 (+) 1341 WP_000417464.1 exodeoxyribonuclease VII large subunit -
  R4701_RS10200 - 1980300..1980512 (+) 213 WP_000043230.1 exodeoxyribonuclease VII small subunit -
  R4701_RS10205 - 1980509..1981384 (+) 876 WP_000743809.1 polyprenyl synthetase family protein -
  R4701_RS10210 - 1981377..1982192 (+) 816 WP_001041079.1 TlyA family RNA methyltransferase -
  R4701_RS10215 - 1982185..1982616 (+) 432 WP_001034412.1 arginine repressor -
  R4701_RS10220 recN 1982623..1984290 (+) 1668 WP_000923583.1 DNA repair protein RecN Machinery gene
  R4701_RS10225 - 1984292..1985020 (+) 729 WP_000133339.1 metallophosphoesterase family protein -
  R4701_RS10230 lepA 1985099..1986922 (+) 1824 WP_001047204.1 translation elongation factor 4 -
  R4701_RS10235 - 1987003..1987200 (-) 198 WP_000693247.1 hypothetical protein -
  R4701_RS10240 - 1987382..1987858 (+) 477 WP_000242207.1 PTS sugar transporter subunit IIA -
  R4701_RS10245 - 1987896..1988198 (+) 303 WP_000590559.1 PTS sugar transporter subunit IIB -
  R4701_RS10250 - 1988206..1989009 (+) 804 Protein_1977 IS5 family transposase -

Sequence

Protein


Download         Length: 555 a.a.        Molecular weight: 62862.27 Da        Isoelectric Point: 4.5999

>NTDB_id=820171 R4701_RS10220 WP_000923583.1 1982623..1984290(+) (recN) [Streptococcus pneumoniae strain 15P3054]
MLLEISIKNFAIIEAISLNFEKGMTVLTGETGAGKSIIIDAMNMMLGARATTDVIRHGAPKAEIEGLFSVENSRLLQEIF
DEQGLELGDEIIIRREILQNGRSISRVNGQMVNLSVLRAIGQHLVDIHGQHDHEELMRPQLHIQMLDEFGDAAFWDLKET
YQTSFDAYRKMRKQVLEVKKNQQEHKARIEMLEFQMAEIEAANLQAGEDLDLNQERDKLLNHKNIADTLTNAYSMLDNED
FSSLANVRSAMNDMESVEEYDPEYREISSSLSETYYVLEDISKRLEAIIEDLDFDGNRLMQVENRLDLLHTITRKYGGTV
DDVLLYFAKITEEYNLLTGNNLSSEDMEAELKKLEVNLVNLAGQLASARHNLAQQLEAEIKQELQDLYMEKAQFQVRFSK
GKFSREGNEMVEFYISTNPGEDFKPLVKVASGGELSRLMLAIKSAFSRKEGKTSIVFDEVDTGVSGRVAQAIAQKIHKIG
QYGQVLAISHLPQVIAIADYQFFIEKISNDHSTVSTVRLLTVEERVEEVAKMLAGDDVTEAALTQARELLRNREK

Nucleotide


Download         Length: 1668 bp        

>NTDB_id=820171 R4701_RS10220 WP_000923583.1 1982623..1984290(+) (recN) [Streptococcus pneumoniae strain 15P3054]
ATGTTACTTGAAATTTCGATAAAAAACTTTGCCATTATTGAGGCTATTTCCCTCAATTTTGAAAAGGGGATGACTGTCCT
GACTGGTGAAACGGGTGCAGGGAAGTCGATTATCATTGATGCCATGAATATGATGTTGGGAGCTCGTGCGACGACAGATG
TTATTCGTCATGGTGCACCAAAGGCAGAGATTGAGGGGCTTTTCTCAGTTGAGAATAGTCGTCTTTTACAGGAAATTTTT
GATGAGCAAGGTTTAGAATTAGGTGATGAAATTATCATCCGTCGGGAAATCTTGCAAAATGGTCGTAGTATCAGCCGTGT
AAATGGTCAGATGGTTAATCTGTCTGTTTTGCGAGCTATTGGGCAACATCTTGTAGATATTCATGGTCAGCATGACCATG
AGGAGTTAATGCGTCCCCAACTGCATATCCAGATGTTGGATGAATTTGGTGATGCCGCTTTTTGGGACTTGAAAGAAACC
TATCAAACGAGTTTTGATGCCTATCGGAAAATGCGCAAGCAGGTTCTGGAAGTCAAGAAAAACCAACAGGAACACAAGGC
ACGTATCGAAATGTTGGAATTTCAAATGGCAGAGATTGAGGCAGCAAACTTGCAGGCTGGAGAAGACTTGGATCTCAATC
AAGAGCGAGATAAACTCCTCAACCACAAAAATATTGCGGATACACTGACCAATGCCTACAGTATGTTGGACAATGAAGAT
TTTTCAAGTCTGGCCAATGTTCGTTCAGCCATGAATGACATGGAAAGTGTCGAAGAGTATGACCCTGAATACCGTGAAAT
TTCAAGCTCTCTGTCTGAGACCTACTATGTTTTAGAAGACATTAGCAAACGTTTGGAAGCTATCATTGAGGACCTTGATT
TTGATGGCAATCGCCTCATGCAGGTTGAGAATCGTTTGGACCTCCTTCATACTATTACTCGTAAGTATGGTGGGACTGTT
GATGATGTTTTGCTTTATTTTGCCAAGATTACGGAAGAATACAATCTCTTGACAGGCAATAATCTTTCGTCTGAGGACAT
GGAAGCAGAGCTTAAGAAGTTGGAAGTCAATCTTGTCAATTTGGCAGGTCAACTTGCTTCTGCTCGTCATAATTTGGCTC
AGCAACTCGAAGCTGAGATTAAACAAGAACTGCAAGATCTTTATATGGAAAAAGCCCAGTTTCAGGTTCGTTTTAGTAAG
GGAAAATTCAGTCGTGAGGGAAATGAAATGGTTGAGTTTTATATTTCAACCAACCCTGGAGAAGACTTTAAACCCTTGGT
TAAGGTTGCTTCTGGAGGGGAATTATCTCGTCTCATGTTAGCCATTAAGTCTGCCTTTTCACGTAAAGAAGGCAAGACTA
GCATTGTCTTTGATGAGGTGGATACGGGAGTTTCAGGTCGTGTTGCTCAAGCTATTGCTCAGAAAATTCATAAAATTGGT
CAGTATGGTCAGGTTTTGGCTATCTCCCATTTGCCACAAGTAATTGCGATTGCAGATTATCAATTCTTTATTGAGAAGAT
TAGTAATGACCATTCAACGGTTTCTACTGTTCGTCTCTTGACGGTCGAAGAGCGAGTGGAGGAAGTTGCCAAGATGTTGG
CAGGTGATGATGTGACAGAAGCAGCCCTGACGCAAGCCAGAGAATTGTTGAGAAACAGGGAGAAATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

42.958

100

0.44