Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   R4701_RS08870 Genome accession   NZ_CP137114
Coordinates   1724255..1724977 (+) Length   240 a.a.
NCBI ID   WP_001833285.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 15P3054     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1719255..1729977
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4701_RS08855 - 1719340..1720962 (+) 1623 WP_000017793.1 polysaccharide biosynthesis protein -
  R4701_RS08860 amiA 1721165..1723123 (+) 1959 WP_000748881.1 peptide ABC transporter substrate-binding protein Regulator
  R4701_RS08865 - 1723334..1724068 (+) 735 Protein_1704 ABC transporter ATP-binding protein -
  R4701_RS08870 rcrP 1724255..1724977 (+) 723 WP_001833285.1 ABC transporter ATP-binding protein Regulator
  R4701_RS08875 - 1725135..1726229 (+) 1095 WP_000031964.1 cystathionine gamma-synthase -
  R4701_RS08880 - 1726237..1727403 (+) 1167 WP_000521374.1 MalY/PatB family protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27166.04 Da        Isoelectric Point: 5.2119

>NTDB_id=820161 R4701_RS08870 WP_001833285.1 1724255..1724977(+) (rcrP) [Streptococcus pneumoniae strain 15P3054]
MNFNHVYFGYDENRPVLKDITCSIFKGQKIAFVGPSGSGKSTIVRLLERFYKPLSGDILMEQSSIYDFNLKEWRSKIAWV
SQNNAVLSGSIRDNLCLGLNRLVTDDELMKVLDLVSLGDEIRSMKEGLDTEVGERGRLLSGGRSQRLQIARAYLKDAEIL
IFDEATANLDADSEYAIISSLYSVLKEKTVVIIAHRLSTVKDVDCIFFLEEGKITGSGTHKELLENHERYARFVQEQMIE

Nucleotide


Download         Length: 723 bp        

>NTDB_id=820161 R4701_RS08870 WP_001833285.1 1724255..1724977(+) (rcrP) [Streptococcus pneumoniae strain 15P3054]
TTGAATTTTAACCATGTCTATTTTGGTTATGATGAAAATCGACCTGTCTTAAAGGATATTACTTGTTCAATTTTCAAGGG
GCAAAAAATTGCTTTTGTTGGGCCATCTGGATCAGGAAAATCAACGATTGTGCGTTTGTTAGAGCGGTTTTATAAACCGC
TTTCAGGAGATATTCTAATGGAGCAATCAAGTATATATGATTTTAACTTAAAAGAATGGAGAAGTAAAATCGCTTGGGTT
TCACAAAATAATGCAGTCTTATCTGGCAGTATTCGTGACAATCTTTGTCTCGGTTTGAATCGCTTAGTAACTGATGATGA
ATTGATGAAAGTGCTAGACTTAGTATCACTAGGTGATGAGATTCGCTCCATGAAAGAGGGACTAGATACTGAAGTTGGTG
AACGCGGACGACTCTTGTCAGGGGGGCGAAGCCAAAGACTTCAAATAGCTAGAGCCTATTTAAAAGATGCTGAAATTCTT
ATATTTGATGAAGCCACTGCTAATCTTGATGCGGATTCTGAGTATGCGATTATCAGTAGCCTCTATTCTGTACTAAAGGA
GAAGACGGTTGTGATTATAGCGCATCGTTTGTCAACGGTAAAAGATGTGGATTGTATTTTCTTCTTAGAGGAGGGGAAAA
TCACTGGCTCAGGAACTCATAAGGAACTACTGGAAAATCATGAGCGTTATGCTCGTTTTGTGCAGGAGCAAATGATAGAG
TGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

36.82

99.583

0.367
  rcrQ Streptococcus mutans UA159

36.25

100

0.363
  comA Streptococcus mitis SK321

37.179

97.5

0.362