Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   R4701_RS05045 Genome accession   NZ_CP137114
Coordinates   1000218..1000988 (-) Length   256 a.a.
NCBI ID   WP_000616166.1    Uniprot ID   Q8DRN4
Organism   Streptococcus pneumoniae strain 15P3054     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 995218..1005988
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4701_RS05005 - 995734..996030 (-) 297 WP_000837726.1 uberolysin/carnocyclin family circular bacteriocin -
  R4701_RS05010 comR 996574..997467 (-) 894 WP_000343891.1 XRE family transcriptional regulator Regulator
  R4701_RS05015 - 997488..997682 (-) 195 WP_000756776.1 hypothetical protein -
  R4701_RS05020 - 998093..998218 (-) 126 WP_000346297.1 PncF family bacteriocin immunity protein -
  R4701_RS05025 blpU 998221..998451 (-) 231 WP_001093075.1 bacteriocin-like peptide BlpU -
  R4701_RS05030 - 998654..998953 (-) 300 Protein_1000 transposase family protein -
  R4701_RS05035 - 998990..999223 (-) 234 WP_000136447.1 acyl carrier protein -
  R4701_RS05040 plsX 999229..1000221 (-) 993 WP_000717456.1 phosphate acyltransferase PlsX -
  R4701_RS05045 recO 1000218..1000988 (-) 771 WP_000616166.1 DNA repair protein RecO Machinery gene
  R4701_RS05050 - 1000985..1002154 (-) 1170 WP_061459568.1 pyridoxal phosphate-dependent aminotransferase -
  R4701_RS05055 - 1002303..1003313 (+) 1011 WP_000009158.1 YeiH family protein -
  R4701_RS05060 - 1003496..1003933 (-) 438 WP_050198148.1 CoA-binding protein -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29818.32 Da        Isoelectric Point: 5.3615

>NTDB_id=820100 R4701_RS05045 WP_000616166.1 1000218..1000988(-) (recO) [Streptococcus pneumoniae strain 15P3054]
MIQSITSQGLVLYNRNFREDDKLVKIFTEQVGKRMFFVKHAGQSKLAPVIQPLVLARFLLRINDDGLSYIEDYHEVMTFP
KINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLQKTLELMEAGLDYQVLTNIFEIQILTRFGISLNFNECVFCHRVG
QAFDFSFKYGTCLCPEHYHEDERRCHLNPNIPYLLNQFQAIDFETLETISLKPGIKQELRQFMDQLYEEYVGIHLKSKKF
IDSLADWGQLLKEEKK

Nucleotide


Download         Length: 771 bp        

>NTDB_id=820100 R4701_RS05045 WP_000616166.1 1000218..1000988(-) (recO) [Streptococcus pneumoniae strain 15P3054]
ATGATTCAGTCTATCACGAGTCAAGGCTTGGTGCTTTACAATCGCAATTTTCGTGAGGATGACAAGCTTGTCAAAATTTT
TACAGAGCAGGTTGGCAAACGCATGTTTTTTGTCAAACACGCTGGTCAGTCTAAGCTGGCGCCTGTTATTCAGCCCTTGG
TGCTGGCACGATTTCTCTTGCGAATCAATGATGACGGACTCAGTTACATCGAAGACTATCATGAGGTCATGACTTTTCCC
AAGATTAATAGTGACCTCTTTGTCATGGCCTATGCGACCTATGTGGCAGCTCTTGCAGATGCTAGTTTGCAGGACAATCA
GCAGGATGCTCCCTTGTTTGCTTTTTTGCAAAAGACTTTGGAGTTGATGGAAGCAGGCTTGGATTATCAGGTTTTGACCA
ATATTTTTGAAATTCAAATTTTGACTCGATTTGGAATCAGCCTCAATTTTAATGAGTGTGTCTTCTGCCATCGGGTTGGT
CAGGCTTTTGACTTTTCTTTCAAATATGGAACCTGTCTCTGTCCAGAGCATTATCATGAGGATGAGAGACGTTGCCATCT
CAATCCCAATATCCCCTATCTGCTCAATCAATTTCAAGCTATTGATTTTGAGACTTTGGAGACCATTTCGCTCAAGCCTG
GAATCAAGCAAGAGCTACGCCAATTTATGGATCAACTATATGAAGAGTACGTTGGGATTCACCTAAAATCAAAGAAATTT
ATTGATTCCCTAGCAGACTGGGGACAATTACTAAAAGAGGAAAAGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(84-238)

Recombination protein O N terminal (RecO_N)

(4-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8DRN4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

100

100

1