Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   P7V53_RS01200 Genome accession   NZ_CP123228
Coordinates   253903..255417 (-) Length   504 a.a.
NCBI ID   WP_280153653.1    Uniprot ID   -
Organism   Piscinibacter sp. XHJ-5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 248903..260417
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P7V53_RS01185 - 249735..251516 (+) 1782 WP_280153650.1 DUF1800 family protein -
  P7V53_RS01190 - 251533..253086 (+) 1554 WP_280153651.1 DUF1501 domain-containing protein -
  P7V53_RS01195 - 253225..253902 (+) 678 WP_280153652.1 glycine zipper 2TM domain-containing protein -
  P7V53_RS01200 comM 253903..255417 (-) 1515 WP_280153653.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  P7V53_RS01205 - 255674..256414 (+) 741 WP_280153654.1 TorF family putative porin -
  P7V53_RS01210 - 256442..256780 (+) 339 WP_124540585.1 P-II family nitrogen regulator -
  P7V53_RS01215 amt 256806..258332 (+) 1527 WP_280153655.1 ammonium transporter -
  P7V53_RS01220 gshA 258502..259797 (+) 1296 WP_280153656.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 53221.14 Da        Isoelectric Point: 8.2885

>NTDB_id=820095 P7V53_RS01200 WP_280153653.1 253903..255417(-) (comM) [Piscinibacter sp. XHJ-5]
MSLAVIHSRALDGLAAPEVTVEVHIANGLPSVTLVGLADTEVKEARERVRAALLHSGLEFPHNKRITVNLAPADLPKESG
RFDLPIALGILAASDQVDRRKLARFEFAGELSLAGDLRPVRGALAMALASRRQGSPRAFVLPLASACEAALVDGLAIHSA
THLLDVVQSMQPGEEAPALPFARAAPPSGAPVWPDLREVRGQSTAKRALEIAAAGGHSLLMVGPPGTGKSMLAQRFAGLL
PPLSEAQALESAAVLSLAGAFDPRRWTQRVLRSPHHSASAAALVGGGSPPRPGEISLAHEGILFLDELPEFPRVALEALR
EPIETGRIVISRAARQAEFPARFQLIAAMNPCPCGQQGNPLRACRCTPEAIARYQGRISGPLLDRIDLQVEVPAVAPELL
AAAPDGEYSAVVAERVAAAQRRQRDRQGCLNAAMGGDDIARHGVLDAAASAFLQNAASRLGWSARSFHRVLRVARSIADL
DGAPAVQVSHLAEAIQYRRVLAPP

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=820095 P7V53_RS01200 WP_280153653.1 253903..255417(-) (comM) [Piscinibacter sp. XHJ-5]
ATGTCGCTGGCCGTCATCCACAGTCGCGCCCTCGACGGCCTGGCCGCACCCGAGGTCACGGTCGAGGTGCATATCGCCAA
TGGCCTGCCGAGCGTGACGCTCGTGGGGCTGGCCGACACCGAGGTCAAGGAAGCGCGCGAACGCGTGCGCGCAGCCCTTC
TGCACAGCGGACTGGAGTTCCCGCACAACAAGCGCATCACCGTCAACCTGGCGCCCGCCGACCTGCCCAAGGAGTCCGGG
CGGTTCGATCTGCCCATCGCGCTGGGCATCCTGGCCGCGAGCGACCAGGTCGACCGGCGCAAGCTCGCCCGCTTCGAGTT
CGCCGGGGAACTGTCGCTCGCCGGCGACCTGCGACCGGTGCGCGGCGCGCTCGCCATGGCGCTGGCCTCGCGCCGGCAGG
GCAGCCCGCGCGCGTTCGTGCTGCCGCTGGCCAGCGCGTGCGAAGCGGCGCTGGTCGACGGTCTGGCGATTCATTCAGCC
ACGCACTTGCTGGATGTCGTGCAGAGCATGCAGCCGGGCGAGGAAGCACCCGCGCTGCCCTTTGCGCGCGCCGCCCCTCC
CAGCGGCGCGCCGGTGTGGCCGGACCTGCGGGAAGTGCGCGGCCAGTCGACAGCCAAACGCGCCCTGGAGATCGCCGCGG
CGGGCGGCCACAGCCTGCTCATGGTCGGCCCGCCCGGCACAGGCAAGTCGATGCTCGCCCAACGCTTCGCGGGCCTGCTG
CCGCCGCTGTCGGAAGCGCAAGCGCTCGAGTCGGCCGCGGTGCTGAGCCTTGCCGGTGCATTCGATCCCCGGCGCTGGAC
ACAGCGCGTGCTGCGCTCGCCGCACCACAGCGCGTCCGCGGCGGCGCTCGTCGGCGGCGGCAGTCCCCCGCGGCCGGGCG
AGATCTCTCTGGCGCACGAGGGCATTCTCTTTCTCGACGAACTGCCGGAGTTCCCGCGCGTCGCGCTCGAAGCGCTGCGC
GAGCCGATCGAAACCGGCCGCATCGTGATCTCGCGCGCCGCGCGGCAGGCGGAGTTTCCGGCGCGTTTCCAGTTGATCGC
CGCGATGAACCCGTGCCCCTGCGGACAGCAAGGCAACCCGCTGCGCGCGTGCCGCTGCACGCCCGAGGCCATCGCCCGCT
ACCAGGGCCGAATCAGCGGACCGCTGCTCGATCGAATCGATCTGCAGGTGGAAGTGCCGGCAGTCGCGCCCGAGTTGCTG
GCGGCCGCGCCCGACGGCGAATACAGCGCCGTTGTGGCCGAGCGGGTGGCCGCGGCGCAGCGCCGTCAGCGGGATCGCCA
GGGATGTCTCAACGCCGCGATGGGCGGCGACGATATCGCGCGCCATGGCGTGCTCGACGCCGCGGCGTCGGCCTTTCTGC
AGAACGCCGCCAGCCGCCTGGGCTGGTCGGCGCGCAGCTTCCACCGGGTGCTGCGCGTCGCCCGCAGCATCGCCGACCTG
GATGGCGCCCCGGCGGTGCAGGTCTCGCACCTGGCCGAGGCGATTCAGTACCGGCGCGTCTTGGCGCCGCCCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(195-397)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(407-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

52.295

99.405

0.52
  comM Vibrio campbellii strain DS40M4

52.087

99.802

0.52
  comM Haemophilus influenzae Rd KW20

50.895

99.802

0.508
  comM Glaesserella parasuis strain SC1401

50.198

100

0.504
  comM Legionella pneumophila str. Paris

48.031

100

0.484
  comM Legionella pneumophila strain ERS1305867

48.031

100

0.484
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.688

100

0.429