Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   R4701_RS00350 Genome accession   NZ_CP137114
Coordinates   84583..85653 (+) Length   356 a.a.
NCBI ID   WP_000817879.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 15P3054     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 79583..90653
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4701_RS00335 ylqF 80816..81667 (+) 852 WP_000201319.1 ribosome biogenesis GTPase YlqF -
  R4701_RS00340 - 81654..82433 (+) 780 WP_000201096.1 ribonuclease HII -
  R4701_RS00345 - 82449..83999 (+) 1551 WP_000392533.1 ClC family H(+)/Cl(-) exchange transporter -
  R4701_RS00350 xerS 84583..85653 (+) 1071 WP_000817879.1 tyrosine recombinase XerS Machinery gene
  R4701_RS00355 - 85728..86717 (-) 990 WP_000873987.1 lipoate--protein ligase -
  R4701_RS00360 lpdA 86781..88484 (-) 1704 WP_001162921.1 dihydrolipoyl dehydrogenase -
  R4701_RS00365 - 88530..89573 (-) 1044 WP_050254899.1 dihydrolipoamide acetyltransferase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41086.15 Da        Isoelectric Point: 9.6949

>NTDB_id=820058 R4701_RS00350 WP_000817879.1 84583..85653(+) (xerS) [Streptococcus pneumoniae strain 15P3054]
MKREILLERIDKLKQLMPWYVLEYYQSKLAVPYSFTTLYEYLKEYDRFFSWVLESGISNADKISDIPLSVLENMSKKDME
SFILYLRERPLLNANTTKQGVSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAARAENIKQK
LFLGDETAGFLTYIDQEHPQQLSNRALSSFNKNKERDLAIIALLLASGVRLSEAVNLDLRDLNLKMMVIDVTRKGGKRDS
VNVAAFAKPYLENYLAIRNQRYKTEKTDTALFLTLYRGVPNRIDASSVEKMVAKYSEDFKVRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVSDEQKNALDSL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=820058 R4701_RS00350 WP_000817879.1 84583..85653(+) (xerS) [Streptococcus pneumoniae strain 15P3054]
ATGAAACGTGAGATTTTACTGGAACGAATCGACAAACTAAAACAACTCATGCCCTGGTATGTTCTGGAATACTACCAATC
TAAGCTGGCTGTGCCCTACAGTTTTACAACCCTGTACGAATACCTTAAGGAATATGACCGATTTTTCAGCTGGGTTTTGG
AGTCTGGTATTTCAAACGCTGATAAAATATCCGATATTCCTTTATCAGTTTTGGAAAATATGTCTAAGAAAGACATGGAA
TCCTTTATCCTTTATCTACGTGAACGTCCCTTGCTGAATGCTAATACAACAAAACAAGGTGTTTCACAGACAACTATCAA
TCGAACCTTATCAGCACTTTCTAGTCTTTACAAATATCTAACCGAGGAGGTTGAAAATGATCAGGGGGAACCTTATTTCT
ATCGTAATGTAATGAAAAAAGTTTCAACCAAGAAAAAGAAAGAAACCCTTGCTGCCAGAGCTGAAAATATCAAGCAAAAA
CTCTTTCTAGGTGATGAAACAGCAGGTTTTCTAACTTATATCGATCAAGAGCACCCACAACAGCTTTCAAATCGAGCTCT
CTCATCATTCAACAAAAATAAAGAACGAGATTTAGCCATTATTGCCCTTCTCTTGGCATCTGGTGTTCGCTTATCTGAAG
CTGTTAATCTAGATCTAAGAGATCTCAATCTAAAAATGATGGTTATTGATGTTACTCGAAAAGGTGGCAAACGTGACTCA
GTCAATGTCGCTGCTTTTGCTAAACCTTATTTAGAGAATTATCTGGCCATTCGGAATCAACGCTATAAAACGGAAAAAAC
AGATACAGCCCTTTTTTTAACTCTCTACAGAGGTGTTCCTAATCGTATCGATGCTTCTAGCGTTGAGAAAATGGTTGCTA
AATACTCAGAGGATTTTAAAGTGCGTGTAACACCCCATAAACTGCGCCATACACTAGCAACTAGGCTCTATGATGCGACT
AAATCACAAGTTTTAGTCAGTCACCAACTAGGACATGCTAGCACACAAGTCACTGACCTCTATACCCATATTGTTAGTGA
TGAACAAAAGAATGCTCTGGATAGTTTATGA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(188-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_1)

(71-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

99.438

100

0.994