Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   R4707_RS06055 Genome accession   NZ_CP137113
Coordinates   1131814..1132584 (+) Length   256 a.a.
NCBI ID   WP_000616162.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain ZGX     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1126814..1137584
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4707_RS06035 - 1128509..1128946 (+) 438 WP_000076483.1 CoA-binding protein -
  R4707_RS06040 - 1128987..1129460 (+) 474 WP_277776445.1 hypothetical protein -
  R4707_RS06045 - 1129489..1130499 (-) 1011 WP_050201288.1 YeiH family protein -
  R4707_RS06050 - 1130648..1131817 (+) 1170 WP_000366345.1 pyridoxal phosphate-dependent aminotransferase -
  R4707_RS06055 recO 1131814..1132584 (+) 771 WP_000616162.1 DNA repair protein RecO Machinery gene
  R4707_RS06060 plsX 1132581..1133573 (+) 993 WP_000717458.1 phosphate acyltransferase PlsX -
  R4707_RS06065 - 1133579..1133812 (+) 234 WP_000136447.1 acyl carrier protein -
  R4707_RS06070 - 1133849..1134149 (+) 301 Protein_1143 transposase family protein -
  R4707_RS06075 blpU 1134352..1134582 (+) 231 Protein_1144 bacteriocin-like peptide BlpU -
  R4707_RS06080 - 1134585..1134710 (+) 126 WP_000346297.1 PncF family bacteriocin immunity protein -
  R4707_RS06085 comA 1135297..1137450 (+) 2154 WP_081543028.1 peptide cleavage/export ABC transporter ComA Regulator

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29788.29 Da        Isoelectric Point: 5.3615

>NTDB_id=820010 R4707_RS06055 WP_000616162.1 1131814..1132584(+) (recO) [Streptococcus pneumoniae strain ZGX]
MIQSITSQGLVLYNRNFREDDKLVKIFTEQVGKRMFFVKHAGQSKLAPVIQPLVLARFLLRINDDGLSYIEDYHEVMTFP
KINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLQKTLELMEAGLDYQVLTNIFEIQILTRFGISLNFNECVFCHRVG
QAFDFSFKYGACLCPEHYHEDERRCHLNPNIPYLLNQFQAIDFETLETISLKPGIKQELRQFMDQLYEEYVGIHLKSKKF
IDSLADWGQLLKEEKK

Nucleotide


Download         Length: 771 bp        

>NTDB_id=820010 R4707_RS06055 WP_000616162.1 1131814..1132584(+) (recO) [Streptococcus pneumoniae strain ZGX]
ATGATTCAGTCTATCACGAGTCAAGGCTTGGTGCTTTACAATCGCAATTTTCGTGAGGATGACAAGCTCGTCAAAATTTT
TACAGAGCAGGTTGGCAAACGCATGTTTTTTGTCAAACACGCTGGTCAGTCTAAGCTGGCGCCTGTTATTCAGCCCTTGG
TGCTGGCACGATTTCTCTTGCGAATCAATGATGACGGACTCAGTTACATCGAAGACTATCATGAGGTCATGACTTTTCCC
AAGATTAATAGTGACCTCTTTGTCATGGCCTATGCGACCTATGTGGCAGCTCTTGCAGATGCTAGTTTGCAGGACAATCA
GCAGGATGCTCCCTTGTTTGCTTTTTTGCAAAAGACTTTGGAGTTGATGGAAGCAGGCTTGGATTATCAGGTTTTGACCA
ATATTTTTGAAATTCAAATTTTGACTCGATTTGGAATCAGCCTCAATTTTAATGAGTGTGTCTTCTGCCATCGGGTTGGT
CAGGCTTTTGACTTTTCTTTCAAATATGGAGCCTGTCTCTGTCCAGAGCATTATCATGAGGATGAGAGACGTTGCCATCT
CAATCCCAATATCCCCTATCTGCTCAATCAATTTCAAGCTATTGATTTTGAGACTTTGGAAACCATTTCGCTCAAGCCTG
GAATCAAGCAAGAGCTACGCCAATTTATGGATCAACTATATGAAGAGTACGTTGGGATTCACCTAAAATCAAAGAAATTT
ATTGATTCCCTAGCAGACTGGGGACAATTACTAAAAGAGGAAAAGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(4-72)

Recombination protein O C terminal (RecO_C)

(84-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

99.609

100

0.996