Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   R4700_RS08275 Genome accession   NZ_CP137112
Coordinates   1606058..1606324 (+) Length   88 a.a.
NCBI ID   WP_061364084.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 02H2025     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1601058..1611324
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4700_RS08255 - 1601165..1601674 (+) 510 WP_000619941.1 N-acetyltransferase -
  R4700_RS08260 pheT 1601751..1604156 (+) 2406 WP_317770865.1 phenylalanine--tRNA ligase subunit beta -
  R4700_RS08265 - 1604329..1605330 (-) 1002 WP_000597995.1 endonuclease/exonuclease/phosphatase family protein -
  R4700_RS08270 - 1605486..1605974 (+) 489 Protein_1586 transposase -
  R4700_RS08275 HI0659 1606058..1606324 (+) 267 WP_061364084.1 helix-turn-helix domain-containing protein Machinery gene
  R4700_RS08280 metE 1606585..1608834 (+) 2250 WP_000108210.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  R4700_RS08285 metF 1608898..1609764 (+) 867 WP_000089980.1 methylenetetrahydrofolate reductase [NAD(P)H] -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 9610.15 Da        Isoelectric Point: 4.6512

>NTDB_id=819912 R4700_RS08275 WP_061364084.1 1606058..1606324(+) (HI0659) [Streptococcus pneumoniae strain 02H2025]
MEGCPSELFSKEEILESDMRVAIMSELIEARHEQGISQKKLEELSGISQPVIARMETGKTSPQLDTVLKVLASLGKTLAI
VPLEQGKS

Nucleotide


Download         Length: 267 bp        

>NTDB_id=819912 R4700_RS08275 WP_061364084.1 1606058..1606324(+) (HI0659) [Streptococcus pneumoniae strain 02H2025]
TTGGAAGGATGTCCATCTGAGCTCTTTAGCAAGGAGGAAATCCTTGAAAGTGATATGCGAGTGGCTATTATGAGCGAGTT
GATTGAAGCTAGACATGAACAAGGAATCAGTCAGAAAAAGCTAGAGGAACTCAGTGGAATAAGCCAGCCTGTCATAGCTA
GGATGGAGACAGGAAAGACTAGTCCTCAGTTGGATACAGTCTTAAAAGTCCTAGCCAGTTTAGGAAAGACACTAGCAATC
GTCCCACTTGAACAGGGAAAAAGTTGA

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(28-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

62.338

87.5

0.545