Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   R4706_RS07405 Genome accession   NZ_CP137111
Coordinates   1440988..1441947 (-) Length   319 a.a.
NCBI ID   WP_000777236.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 17023     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1435988..1446947
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4706_RS07375 scpB 1436487..1437056 (+) 570 WP_000105310.1 SMC-Scp complex subunit ScpB -
  R4706_RS07380 - 1437043..1437765 (+) 723 WP_001222228.1 pseudouridine synthase -
  R4706_RS07385 yidD 1437765..1438007 (+) 243 WP_000821640.1 membrane protein insertion efficiency factor YidD -
  R4706_RS07390 - 1438232..1439197 (-) 966 WP_000858260.1 siderophore ABC transporter substrate-binding protein -
  R4706_RS07395 - 1439293..1440045 (-) 753 WP_000764306.1 ABC transporter ATP-binding protein -
  R4706_RS07400 - 1440042..1440998 (-) 957 WP_001193668.1 iron chelate uptake ABC transporter family permease subunit -
  R4706_RS07405 ceuB 1440988..1441947 (-) 960 WP_000777236.1 ABC transporter permease Machinery gene
  R4706_RS07410 - 1442244..1442354 (-) 111 WP_001108391.1 hypothetical protein -
  R4706_RS07415 galE 1442370..1443071 (-) 702 WP_000167850.1 UDP-glucose 4-epimerase GalE -
  R4706_RS07420 pepA 1443470..1444534 (+) 1065 WP_000209199.1 glutamyl aminopeptidase -
  R4706_RS07425 - 1444556..1444852 (+) 297 WP_000840140.1 bacteriocin immunity protein -
  R4706_RS07430 - 1445534..1445977 (+) 444 WP_000655202.1 MarR family winged helix-turn-helix transcriptional regulator -
  R4706_RS07435 - 1445981..1446745 (+) 765 WP_000082876.1 nuclear transport factor 2 family protein -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 35432.32 Da        Isoelectric Point: 9.7465

>NTDB_id=819790 R4706_RS07405 WP_000777236.1 1440988..1441947(-) (ceuB) [Streptococcus pneumoniae strain 17023]
MKLSHYLIGLLLLLVFLSISIGTSDFSWGKLFDFDQQTWLLFQESRLPRTISILLTASSMSMAGLLMQTITQNQFAAPST
VGTTEAAKLGMVLSLFVFPSASLTQKMLFAFISSIVFTLFFLAFMTIFTVKERWMLPLIGIIYSGIIGSVTEVIAYRFNL
VQSMTAWTQGSFSMIQTHQYEWLFLGLIILITVWKLSQTFTIMNLGKETSESLGISYSLLEKLALFLVALTTSVTMITVG
GLPFLGVIVPNLVRKRYGDNLSQTKLMVALVGANLVLACDILSRVLIRPYELSVSLLLGIIGSLVFILLLWRGGRKDAD

Nucleotide


Download         Length: 960 bp        

>NTDB_id=819790 R4706_RS07405 WP_000777236.1 1440988..1441947(-) (ceuB) [Streptococcus pneumoniae strain 17023]
ATGAAACTTTCTCATTATTTAATTGGCTTACTTCTACTCCTAGTCTTTCTCTCTATTAGCATTGGGACCAGTGATTTTTC
ATGGGGAAAGCTATTTGATTTCGACCAGCAGACCTGGCTCCTCTTTCAAGAGTCCCGTCTCCCAAGAACTATCAGTATTC
TCCTGACTGCCTCTAGTATGAGTATGGCAGGCCTTCTCATGCAGACTATTACCCAAAATCAGTTTGCTGCACCGAGTACA
GTTGGAACGACTGAAGCCGCCAAACTGGGGATGGTGCTGAGCCTTTTTGTCTTTCCATCGGCTAGTCTGACCCAAAAGAT
GCTCTTCGCTTTTATTTCATCCATCGTATTCACCCTCTTCTTCCTAGCCTTTATGACCATTTTTACTGTAAAGGAAAGGT
GGATGTTACCTCTGATTGGGATCATCTATAGCGGGATTATCGGCTCAGTCACAGAAGTTATCGCCTATCGTTTCAATCTG
GTTCAGAGTATGACTGCCTGGACCCAGGGCTCCTTCTCCATGATTCAGACCCATCAGTATGAGTGGCTCTTCTTAGGCCT
CATCATCCTGATAACCGTTTGGAAATTATCCCAAACCTTCACCATCATGAATCTAGGGAAAGAAACCAGCGAGAGTTTGG
GGATTTCCTACTCCCTACTTGAAAAACTGGCCCTCTTTCTGGTGGCGCTAACGACAAGCGTCACCATGATTACCGTGGGT
GGCCTACCATTTCTCGGAGTTATCGTTCCCAATCTTGTTCGCAAGCGCTATGGAGATAATCTAAGTCAAACCAAACTCAT
GGTCGCACTGGTTGGTGCCAATCTAGTTCTGGCTTGCGATATCCTATCCCGAGTTCTGATTAGGCCCTATGAGTTGTCTG
TCAGTCTCTTGCTAGGAATCATCGGTAGTCTCGTCTTTATCCTACTTCTCTGGAGAGGGGGACGAAAAGATGCAGACTAA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(10-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

37.097

97.179

0.361