Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   R4712_RS07295 Genome accession   NZ_CP137110
Coordinates   1416712..1417422 (-) Length   236 a.a.
NCBI ID   WP_000760673.1    Uniprot ID   A0A0H2URH4
Organism   Streptococcus pneumoniae strain 16H2041     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1411712..1422422
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4712_RS07275 amiD 1412216..1413142 (+) 927 WP_000103697.1 oligopeptide ABC transporter permease OppC Regulator
  R4712_RS07280 amiE 1413151..1414218 (+) 1068 WP_000159553.1 ABC transporter ATP-binding protein Regulator
  R4712_RS07285 - 1414229..1415155 (+) 927 WP_044812815.1 ATP-binding cassette domain-containing protein -
  R4712_RS07290 - 1415230..1416556 (-) 1327 Protein_1395 ISL3 family transposase -
  R4712_RS07295 treR 1416712..1417422 (-) 711 WP_000760673.1 trehalose operon repressor Regulator
  R4712_RS07300 treP 1417607..1419574 (+) 1968 WP_044812636.1 PTS system trehalose-specific EIIBC component -
  R4712_RS07305 treC 1419752..1421377 (+) 1626 WP_000171209.1 alpha,alpha-phosphotrehalase -
  R4712_RS07310 - 1421633..1421881 (+) 249 WP_000364990.1 YneF family protein -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27607.78 Da        Isoelectric Point: 8.9698

>NTDB_id=819665 R4712_RS07295 WP_000760673.1 1416712..1417422(-) (treR) [Streptococcus pneumoniae strain 16H2041]
MKKYQQLFKQIQETIQNETYAVGDFLPSEHDLMEQYQVSRDTVRKALSLLQEEGLIKKIRGQGSQVVKEETVNFPVSNLT
SYQELVKELGLRSKTNVVSLDKIIIDKKSSLITGFPEFRMVWKVVRQRVVDDLVSVLDTDYLDMELIPNLTRQIAEQSIY
SYIENGLKLLIDYAQKEITIDHSSDRDKILMDIGKDPYVVSIKSKVYLQDGRQFQFTESRHKLEKFRFVDFAKRKK

Nucleotide


Download         Length: 711 bp        

>NTDB_id=819665 R4712_RS07295 WP_000760673.1 1416712..1417422(-) (treR) [Streptococcus pneumoniae strain 16H2041]
ATGAAGAAATACCAACAATTATTTAAGCAAATCCAAGAAACCATTCAAAACGAGACTTACGCTGTCGGAGATTTCCTTCC
TAGCGAGCACGACCTTATGGAGCAATATCAAGTGAGTCGTGATACCGTCCGAAAGGCCCTGTCTCTCCTCCAAGAGGAAG
GATTGATCAAAAAGATAAGAGGGCAAGGTTCTCAAGTCGTCAAAGAAGAAACCGTCAATTTCCCTGTATCCAACCTAACC
AGCTACCAAGAACTAGTTAAAGAACTTGGACTGCGCTCTAAAACCAACGTGGTCAGTCTGGACAAGATTATTATTGATAA
AAAATCCTCACTGATAACCGGTTTCCCAGAGTTTCGGATGGTTTGGAAGGTGGTCCGCCAGCGTGTGGTGGATGATCTGG
TATCCGTTCTGGATACGGACTATCTGGATATGGAACTCATCCCAAATCTCACTCGCCAAATTGCTGAGCAGTCTATCTAT
TCTTATATAGAAAATGGCCTCAAACTCCTTATTGATTATGCTCAGAAGGAAATCACCATTGACCACTCAAGCGACCGAGA
CAAGATTCTCATGGACATTGGCAAAGACCCTTATGTCGTTTCGATTAAATCAAAAGTCTATCTCCAAGACGGACGCCAAT
TTCAGTTTACCGAAAGTCGCCATAAGTTAGAAAAATTTAGATTTGTAGATTTTGCAAAACGCAAGAAATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(89-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2URH4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

59.322

100

0.593