Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   R8613_RS05840 Genome accession   NZ_AP026919
Coordinates   1126136..1127803 (-) Length   555 a.a.
NCBI ID   WP_000923573.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900700012     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1121136..1132803
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8613_RS05815 - 1121459..1122266 (-) 808 Protein_1155 IS5 family transposase -
  R8613_RS05820 (PC0012_11270) - 1122274..1122576 (-) 303 WP_000590580.1 PTS sugar transporter subunit IIB -
  R8613_RS05825 (PC0012_11280) - 1122614..1123090 (-) 477 WP_000242193.1 PTS sugar transporter subunit IIA -
  R8613_RS05830 (PC0012_11290) lepA 1123504..1125327 (-) 1824 WP_001047216.1 translation elongation factor 4 -
  R8613_RS05835 (PC0012_11300) - 1125406..1126134 (-) 729 WP_000133335.1 metallophosphoesterase family protein -
  R8613_RS05840 (PC0012_11310) recN 1126136..1127803 (-) 1668 WP_000923573.1 DNA repair protein RecN Machinery gene
  R8613_RS05845 (PC0012_11320) - 1127810..1128241 (-) 432 WP_001034415.1 arginine repressor -
  R8613_RS05850 (PC0012_11330) - 1128234..1129049 (-) 816 WP_001041073.1 TlyA family RNA methyltransferase -
  R8613_RS05855 (PC0012_11340) - 1129042..1129917 (-) 876 WP_000743815.1 polyprenyl synthetase family protein -
  R8613_RS05860 (PC0012_11350) - 1129914..1130126 (-) 213 WP_000043230.1 exodeoxyribonuclease VII small subunit -
  R8613_RS05865 (PC0012_11360) xseA 1130104..1131444 (-) 1341 WP_000417464.1 exodeoxyribonuclease VII large subunit -
  R8613_RS05870 (PC0012_11370) udk 1131572..1132210 (-) 639 WP_001181378.1 uridine kinase -
  R8613_RS05875 (PC0012_11380) - 1132318..1132620 (-) 303 WP_000985089.1 bacteriocin immunity protein -

Sequence

Protein


Download         Length: 555 a.a.        Molecular weight: 62791.28 Da        Isoelectric Point: 4.7067

>NTDB_id=81956 R8613_RS05840 WP_000923573.1 1126136..1127803(-) (recN) [Streptococcus pneumoniae strain PZ900700012]
MLLEISIKNFAIIEAISLNFEKGMTVLTGETGAGKSIIIDAMNMMLGARATTDVIRHGAPKAEIEGLFSVENSRLLQEIF
DEQGLELGDEIIIRREILQNGRSISRVNGQMVNLSVLRAIGQHLVDIHGQHDHEELMRPQLHIQMLDEFGDAAFWDLKET
YQTSFDAYRKMRKQVLEVKKNQQEHKARIEMLEFQMAEIEAANLQAGEDLALNQERDKLLNHKNIADTLTNAYSMLDNED
FSSLANVRSAMNDMESVEEYDPEYREISSSLSETYYVLEDISKRLEAIIEDLDFDGNRLMQVENRLDLLHTITRKYGGTV
DDVLLYFAKITEEYNLLTGNNLSSEDMEAELKKLEVNLVNLAGQLASARHNLAQQLEAEIKQELQDLYMEKAQFQVRFSK
GKFSREGNKMVEFYISTNPGEDFKPLVKVASGGELSRLMLAIKSAFSRKEGKTSIVFDEVDTGVSGRVAQAIAQKIHKIG
QHGQVLAISHLPQVIAIADYQFFIEKISNDHSTVSTVRLLTVEERVEEVAKMLAGDDVTEAALTQARELLRNREK

Nucleotide


Download         Length: 1668 bp        

>NTDB_id=81956 R8613_RS05840 WP_000923573.1 1126136..1127803(-) (recN) [Streptococcus pneumoniae strain PZ900700012]
ATGTTACTTGAAATTTCGATAAAAAACTTTGCCATTATTGAGGCTATTTCCCTCAATTTTGAAAAGGGGATGACTGTCCT
GACTGGTGAAACGGGTGCAGGGAAGTCGATTATCATTGATGCCATGAATATGATGTTGGGAGCTCGTGCGACGACAGATG
TTATTCGTCATGGTGCACCAAAGGCAGAGATTGAGGGGCTTTTCTCAGTTGAGAATAGTCGTCTTTTACAGGAAATTTTT
GATGAGCAAGGTTTAGAATTAGGTGATGAAATTATCATCCGTCGGGAAATCTTGCAAAATGGTCGTAGTATCAGCCGTGT
AAATGGTCAGATGGTTAATCTGTCTGTTTTGCGAGCTATTGGGCAACATCTTGTAGATATTCATGGTCAGCATGACCATG
AGGAGTTAATGCGTCCCCAACTGCATATCCAGATGTTGGATGAATTTGGTGATGCCGCTTTTTGGGACTTGAAAGAAACC
TATCAAACGAGTTTTGATGCCTATCGGAAAATGCGCAAGCAGGTTCTGGAAGTCAAGAAAAACCAACAGGAACACAAGGC
ACGTATCGAAATGTTGGAATTTCAAATGGCAGAGATTGAGGCAGCAAACTTGCAGGCTGGAGAAGACTTGGCTCTCAATC
AAGAGCGAGATAAACTCCTCAACCACAAAAATATTGCGGATACACTGACCAATGCCTACAGTATGTTGGACAATGAAGAT
TTTTCAAGTCTGGCCAATGTTCGTTCAGCTATGAATGACATGGAAAGTGTCGAAGAGTATGATCCTGAATACCGTGAAAT
TTCAAGCTCTCTGTCTGAGACCTACTATGTTTTAGAAGACATTAGCAAACGTTTGGAAGCTATCATTGAGGACCTTGATT
TTGATGGCAATCGCCTGATGCAGGTTGAGAATCGTTTGGACCTCCTTCATACTATTACTCGTAAGTATGGTGGGACTGTT
GATGATGTTTTGCTTTATTTTGCCAAGATTACGGAAGAATACAATCTCTTGACAGGCAATAATCTTTCGTCTGAGGACAT
GGAAGCAGAGCTTAAGAAGTTGGAAGTCAATCTTGTCAATTTGGCAGGTCAACTTGCTTCTGCTCGTCATAATTTGGCTC
AGCAACTCGAAGCTGAGATTAAACAAGAACTGCAAGATCTTTATATGGAAAAAGCCCAGTTTCAGGTTCGTTTTAGTAAG
GGAAAATTCAGTCGTGAGGGAAATAAAATGGTTGAGTTTTATATTTCAACCAACCCTGGAGAAGACTTTAAACCCTTGGT
TAAGGTTGCTTCTGGAGGGGAATTATCTCGTCTCATGTTAGCCATTAAGTCTGCCTTTTCACGTAAAGAAGGCAAGACTA
GCATTGTCTTTGATGAGGTGGATACGGGAGTTTCAGGTCGTGTTGCTCAAGCTATTGCTCAGAAAATTCATAAAATTGGT
CAGCATGGTCAGGTTTTGGCTATCTCCCATTTGCCACAAGTAATTGCGATTGCAGATTATCAATTCTTTATTGAGAAGAT
TAGTAATGACCATTCAACGGTTTCGACTGTTCGTCTCTTGACGGTCGAAGAGCGAGTGGAGGAAGTTGCCAAGATGTTGG
CAGGTGATGATGTGACAGAAGCAGCCCTGACGCAAGCCAGAGAATTGTTGAGAAACAGGGAGAAATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

42.958

100

0.44

Multiple sequence alignment