Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   JMH23_RS13885 Genome accession   NZ_AP023286
Coordinates   2894071..2894700 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 2018-18.25PC     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2889071..2899700
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMH23_RS13870 (VEGS15_27210) helD 2889313..2891367 (-) 2055 WP_001295354.1 DNA helicase IV -
  JMH23_RS13875 (VEGS15_27220) yccF 2891490..2891936 (+) 447 WP_001261235.1 YccF domain-containing protein -
  JMH23_RS13880 (VEGS15_27230) yccS 2891946..2894108 (+) 2163 WP_000875061.1 YccS family putative transporter -
  JMH23_RS13885 (VEGS15_27240) sxy/tfoX 2894071..2894700 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  JMH23_RS13890 (VEGS15_27250) sulA 2894919..2895428 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  JMH23_RS13895 (VEGS15_27270) ompA 2895785..2896825 (+) 1041 WP_000750416.1 porin OmpA -
  JMH23_RS13900 (VEGS15_27280) matP 2896901..2897353 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  JMH23_RS13905 (VEGS15_27290) ycbZ 2897539..2899299 (+) 1761 WP_032292163.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=81952 JMH23_RS13885 WP_000839153.1 2894071..2894700(-) (sxy/tfoX) [Escherichia coli strain 2018-18.25PC]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=81952 JMH23_RS13885 WP_000839153.1 2894071..2894700(-) (sxy/tfoX) [Escherichia coli strain 2018-18.25PC]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment