Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   R4704_RS03560 Genome accession   NZ_CP137109
Coordinates   694267..694977 (+) Length   236 a.a.
NCBI ID   WP_000760673.1    Uniprot ID   A0A0H2URH4
Organism   Streptococcus pneumoniae strain 11012     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 689267..699977
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4704_RS03545 - 689808..690056 (-) 249 WP_000364990.1 YneF family protein -
  R4704_RS03550 treC 690312..691937 (-) 1626 WP_000171220.1 alpha,alpha-phosphotrehalase -
  R4704_RS03555 treP 692115..694082 (-) 1968 WP_000514329.1 PTS system trehalose-specific EIIBC component -
  R4704_RS03560 treR 694267..694977 (+) 711 WP_000760673.1 trehalose operon repressor Regulator
  R4704_RS03565 - 695134..696277 (+) 1144 Protein_709 transposase -
  R4704_RS03570 - 696444..697790 (+) 1347 WP_001814919.1 IS1380-like element ISSpn5 family transposase -
  R4704_RS03575 - 697983..698168 (+) 186 Protein_711 transposase -
  R4704_RS03580 - 698243..699169 (-) 927 WP_001291293.1 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27607.78 Da        Isoelectric Point: 8.9698

>NTDB_id=819485 R4704_RS03560 WP_000760673.1 694267..694977(+) (treR) [Streptococcus pneumoniae strain 11012]
MKKYQQLFKQIQETIQNETYAVGDFLPSEHDLMEQYQVSRDTVRKALSLLQEEGLIKKIRGQGSQVVKEETVNFPVSNLT
SYQELVKELGLRSKTNVVSLDKIIIDKKSSLITGFPEFRMVWKVVRQRVVDDLVSVLDTDYLDMELIPNLTRQIAEQSIY
SYIENGLKLLIDYAQKEITIDHSSDRDKILMDIGKDPYVVSIKSKVYLQDGRQFQFTESRHKLEKFRFVDFAKRKK

Nucleotide


Download         Length: 711 bp        

>NTDB_id=819485 R4704_RS03560 WP_000760673.1 694267..694977(+) (treR) [Streptococcus pneumoniae strain 11012]
ATGAAGAAATACCAACAATTATTTAAGCAAATCCAAGAAACCATTCAAAACGAGACTTACGCTGTCGGAGATTTCCTTCC
TAGCGAGCACGACCTTATGGAGCAATATCAAGTGAGTCGTGATACCGTCCGAAAGGCCCTGTCTCTCCTCCAAGAGGAAG
GATTGATCAAAAAGATAAGAGGGCAAGGTTCTCAAGTCGTCAAAGAAGAAACCGTCAATTTCCCTGTATCCAACCTAACC
AGCTACCAAGAACTAGTTAAAGAACTTGGACTGCGCTCTAAAACCAACGTGGTCAGTCTGGACAAGATTATTATTGATAA
AAAATCCTCACTGATAACCGGTTTCCCAGAGTTTCGGATGGTTTGGAAGGTGGTCCGCCAGCGTGTGGTGGATGATCTGG
TATCCGTTCTGGATACAGACTATCTGGATATGGAACTCATCCCAAATCTCACTCGCCAAATTGCTGAGCAGTCTATCTAT
TCTTATATAGAAAATGGCCTCAAACTCCTTATTGATTATGCTCAGAAGGAAATCACCATTGACCACTCAAGCGACCGAGA
CAAGATTCTCATGGACATTGGCAAAGACCCTTATGTCGTTTCGATTAAATCAAAAGTCTATCTCCAAGACGGACGCCAAT
TTCAGTTTACCGAAAGTCGCCATAAGTTAGAGAAATTTAGATTTGTAGATTTTGCAAAACGCAAGAAATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(89-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2URH4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

59.322

100

0.593