Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   R4704_RS03480 Genome accession   NZ_CP137109
Coordinates   679946..680905 (+) Length   319 a.a.
NCBI ID   WP_000778475.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 11012     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 674946..685905
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4704_RS03450 - 675105..675869 (-) 765 WP_000082879.1 nuclear transport factor 2 family protein -
  R4704_RS03455 - 675873..676316 (-) 444 WP_000651443.1 MarR family winged helix-turn-helix transcriptional regulator -
  R4704_RS03460 - 676998..677294 (-) 297 WP_000840137.1 bacteriocin immunity protein -
  R4704_RS03465 pepA 677316..678380 (-) 1065 WP_000209199.1 glutamyl aminopeptidase -
  R4704_RS03470 galE 678781..679500 (+) 720 WP_001814725.1 UDP-glucose 4-epimerase GalE -
  R4704_RS03475 - 679497..679649 (+) 153 WP_001108392.1 hypothetical protein -
  R4704_RS03480 ceuB 679946..680905 (+) 960 WP_000778475.1 ABC transporter permease Machinery gene
  R4704_RS03485 - 680895..681851 (+) 957 WP_001193665.1 iron chelate uptake ABC transporter family permease subunit -
  R4704_RS03490 - 681848..682600 (+) 753 WP_000764303.1 ABC transporter ATP-binding protein -
  R4704_RS03495 - 682696..683661 (+) 966 WP_000858251.1 siderophore ABC transporter substrate-binding protein -
  R4704_RS03500 yidD 683886..684128 (-) 243 WP_000821615.1 membrane protein insertion efficiency factor YidD -
  R4704_RS03505 - 684128..684850 (-) 723 WP_001222228.1 pseudouridine synthase -
  R4704_RS03510 scpB 684837..685406 (-) 570 WP_000105310.1 SMC-Scp complex subunit ScpB -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 35391.28 Da        Isoelectric Point: 9.2573

>NTDB_id=819484 R4704_RS03480 WP_000778475.1 679946..680905(+) (ceuB) [Streptococcus pneumoniae strain 11012]
MKLSYYLIGLLLLLVFLSISIGTSDFSWGKLFDFDQQTWLLFQESRLPRTISILLTASSMSMAGLLMQTITQNQFAAPST
VGTTEAAKLGMVLSLFVFPSASLTQKMLFAFVSSIVFTLFFLAFMTIFTVKERWMLPLIGIIYSGIIGSVTEVIAYRFNL
VQSMTAWTQGSFSMIQTHQYEWLFLGLIILITVWKLSQTFTIMNLGKETSESLGISYSLLEKLALFLVALTTSVTMITVG
GLPFLGVIVPNLVRKCYGDNLSQTKLMVALVGANLVLACDILSRVLIRPYELSVSLLLGIIGSLVFILLLWRGGRKDAD

Nucleotide


Download         Length: 960 bp        

>NTDB_id=819484 R4704_RS03480 WP_000778475.1 679946..680905(+) (ceuB) [Streptococcus pneumoniae strain 11012]
ATGAAACTTTCTTATTATTTAATTGGCTTACTTCTACTCCTAGTCTTTCTCTCTATTAGCATTGGGACCAGTGATTTTTC
ATGGGGAAAGCTATTTGATTTCGACCAGCAGACCTGGCTCCTCTTTCAAGAGTCCCGTCTCCCAAGAACTATCAGTATTC
TCCTGACTGCCTCTAGTATGAGTATGGCAGGCCTTCTCATGCAGACTATTACCCAAAATCAGTTTGCTGCACCGAGTACA
GTTGGAACGACTGAAGCCGCCAAACTGGGAATGGTGCTGAGCCTTTTTGTCTTTCCATCGGCTAGTCTGACCCAAAAGAT
GCTCTTCGCTTTTGTTTCATCCATCGTATTCACCCTCTTCTTCCTAGCCTTTATGACCATTTTTACTGTAAAGGAAAGGT
GGATGTTGCCTCTGATTGGGATCATCTATAGCGGGATTATCGGCTCAGTCACAGAAGTTATCGCCTATCGTTTCAATCTG
GTTCAGAGTATGACTGCCTGGACCCAGGGCTCCTTCTCCATGATTCAGACCCATCAGTATGAGTGGCTCTTCTTAGGCCT
CATCATCCTGATAACCGTTTGGAAATTATCCCAAACCTTCACCATCATGAATCTAGGGAAAGAAACCAGCGAGAGTTTGG
GGATTTCCTACTCCCTACTTGAAAAACTGGCCCTCTTTCTGGTGGCGCTAACGACAAGCGTCACCATGATTACCGTGGGT
GGCCTACCATTTCTCGGAGTTATCGTTCCCAATCTTGTTCGCAAGTGCTATGGAGATAATCTAAGTCAAACCAAACTCAT
GGTCGCACTGGTTGGTGCCAATCTAGTTCTGGCTTGCGATATCCTATCCCGAGTTCTGATTAGGCCCTATGAGTTGTCTG
TCAGTCTCTTGCTAGGAATCATCGGTAGTCTCGTCTTTATCCTACTTCTCTGGAGAGGGGGACGAAAAGATGCAGACTAA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(10-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

37.419

97.179

0.364