Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   R4704_RS00470 Genome accession   NZ_CP137109
Coordinates   92921..94588 (-) Length   555 a.a.
NCBI ID   WP_000923569.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 11012     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 87921..99588
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4704_RS00440 - 88018..88825 (-) 808 Protein_88 IS5 family transposase -
  R4704_RS00445 - 88833..89135 (-) 303 WP_000590580.1 PTS sugar transporter subunit IIB -
  R4704_RS00450 - 89173..89649 (-) 477 WP_033705444.1 PTS sugar transporter subunit IIA -
  R4704_RS00455 - 89831..90208 (+) 378 WP_317830429.1 hypothetical protein -
  R4704_RS00460 lepA 90289..92112 (-) 1824 WP_033705445.1 translation elongation factor 4 -
  R4704_RS00465 - 92191..92919 (-) 729 WP_033707836.1 metallophosphoesterase family protein -
  R4704_RS00470 recN 92921..94588 (-) 1668 WP_000923569.1 DNA repair protein RecN Machinery gene
  R4704_RS00475 - 94595..95026 (-) 432 WP_001034415.1 arginine repressor -
  R4704_RS00480 - 95019..95834 (-) 816 WP_001041073.1 TlyA family RNA methyltransferase -
  R4704_RS00485 - 95827..96702 (-) 876 WP_000743808.1 polyprenyl synthetase family protein -
  R4704_RS00490 - 96699..96911 (-) 213 WP_000043230.1 exodeoxyribonuclease VII small subunit -
  R4704_RS00495 xseA 96889..98229 (-) 1341 WP_317830433.1 exodeoxyribonuclease VII large subunit -
  R4704_RS00500 udk 98357..98995 (-) 639 WP_033705448.1 uridine kinase -

Sequence

Protein


Download         Length: 555 a.a.        Molecular weight: 62804.23 Da        Isoelectric Point: 4.6211

>NTDB_id=819458 R4704_RS00470 WP_000923569.1 92921..94588(-) (recN) [Streptococcus pneumoniae strain 11012]
MLLEISIKNFAIIEAISLNFEKGMTVLTGETGAGKSIIIDAMNMMLGARATTDVIRHGAPKAEIEGLFSVENSRLLQEIF
DEQGLELGDEIIIRREILQNGRSISRVNGQMVNLSVLRAIGQHLVDIHGQHDHEELMRPQLHIQMLDEFGDAAFWDLKET
YQTSFDAYRKMRKQVLEVKKNQQEHKARIEMLEFQMAEIEAANLQAGEDLALNQERDKLLNHKNIADTLTNAYSMLDNED
FSSLANVRSAMNDMESVEEYDPEYREISSSLSETYYVLEDISKRLEAIIEDLDFDGNRLMQVENRLDLLHTITRKYGGTV
DDVLLYFAKITEEYNLLTGNNLSSEDMEAELKKLEVNLVNLAGQLASARHNLAQQLEADIKQELQDLYMEKAQFQVRFSK
GKFSREGNEMVEFYISTNPGEDFKPLVKVASGGELSRLMLAIKSAFSRKEGKTSIVFDEVDTGVSGRVAQAIAQKIHKIG
QYGQVLAISHLPQVIAIADYQFFIEKISNDHSTVSTVRLLTVEERVEEVAKMLAGDDVTEAALTQARELLRNREK

Nucleotide


Download         Length: 1668 bp        

>NTDB_id=819458 R4704_RS00470 WP_000923569.1 92921..94588(-) (recN) [Streptococcus pneumoniae strain 11012]
ATGTTACTTGAAATTTCGATAAAAAACTTTGCCATTATTGAGGCTATTTCCCTCAATTTTGAAAAGGGGATGACTGTCCT
GACTGGTGAAACGGGTGCAGGGAAGTCGATTATCATTGATGCCATGAATATGATGTTGGGAGCTCGTGCGACGACAGATG
TTATTCGTCATGGTGCACCAAAGGCAGAGATTGAGGGGCTTTTCTCAGTTGAGAATAGTCGTCTTTTACAGGAAATTTTT
GATGAGCAAGGTTTAGAATTAGGTGATGAAATTATCATCCGTCGGGAAATCTTGCAAAATGGTCGTAGTATCAGCCGTGT
AAATGGTCAGATGGTTAATCTGTCTGTTTTGCGAGCTATTGGGCAACATCTTGTAGATATTCATGGTCAGCATGACCATG
AGGAGTTAATGCGTCCCCAACTGCATATCCAGATGTTGGATGAATTTGGTGATGCCGCTTTTTGGGACTTGAAAGAAACC
TATCAAACGAGTTTTGATGCCTATCGGAAAATGCGTAAGCAGGTTCTGGAAGTCAAGAAAAACCAACAGGAACACAAGGC
ACGTATTGAAATGTTGGAATTTCAAATGGCAGAGATTGAGGCAGCAAACTTGCAGGCTGGAGAAGACTTGGCTCTCAATC
AAGAGCGAGATAAACTCCTCAACCACAAAAATATTGCGGATACACTGACCAATGCCTACAGTATGTTGGACAATGAAGAT
TTTTCAAGTCTGGCCAATGTTCGTTCAGCTATGAATGACATGGAAAGTGTCGAAGAGTATGATCCTGAATACCGTGAAAT
TTCAAGCTCTCTGTCTGAGACCTACTATGTTTTAGAAGACATTAGCAAACGTTTGGAAGCTATCATTGAGGACCTTGATT
TTGATGGCAATCGCCTGATGCAGGTTGAGAATCGTTTGGACCTCCTTCATACTATTACTCGTAAGTATGGTGGGACTGTT
GATGATGTTTTGCTTTATTTTGCCAAGATTACGGAAGAATACAATCTCTTGACAGGCAATAATCTTTCGTCTGAGGACAT
GGAAGCAGAGCTTAAGAAGTTGGAAGTCAATCTTGTCAATTTGGCAGGTCAACTTGCTTCTGCTCGTCATAATTTGGCTC
AGCAACTCGAAGCTGACATTAAACAAGAACTGCAAGATCTTTATATGGAAAAAGCCCAGTTTCAGGTTCGTTTTAGTAAG
GGAAAATTCAGTCGTGAGGGAAATGAAATGGTTGAGTTTTATATTTCAACCAACCCTGGAGAAGACTTTAAACCCTTGGT
TAAGGTTGCTTCTGGAGGGGAATTATCTCGTCTCATGTTAGCCATTAAGTCTGCCTTTTCACGTAAAGAAGGCAAGACTA
GCATTGTCTTTGATGAGGTGGATACGGGAGTTTCAGGTCGTGTTGCTCAAGCTATTGCTCAGAAAATTCATAAAATTGGT
CAGTATGGTCAGGTTTTGGCTATCTCCCATTTGCCACAAGTAATTGCGATTGCAGATTATCAATTTTTTATTGAGAAGAT
TAGTAATGACCATTCAACGGTTTCGACTGTTCGTCTCTTGACAGTCGAAGAGCGAGTGGAGGAAGTTGCCAAGATGTTGG
CAGGTGATGATGTGACAGAAGCAGCCCTGACGCAAGCAAGAGAATTGTTGAGAAACAGGGAGAAATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

42.782

100

0.438