Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   R4715_RS03410 Genome accession   NZ_CP137108
Coordinates   705664..706260 (+) Length   198 a.a.
NCBI ID   WP_000248773.1    Uniprot ID   C1CPN7
Organism   Streptococcus pneumoniae strain OXT     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 700664..711260
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4715_RS03385 mapZ 701609..703003 (-) 1395 WP_000039290.1 mid-cell-anchored protein MapZ -
  R4715_RS03390 - 703016..704173 (-) 1158 WP_000711398.1 class I SAM-dependent RNA methyltransferase -
  R4715_RS03400 gpsB 704659..705000 (-) 342 WP_000200644.1 cell division regulator GpsB -
  R4715_RS03405 - 705070..705597 (-) 528 WP_000179553.1 DUF1273 domain-containing protein -
  R4715_RS03410 recU 705664..706260 (+) 597 WP_000248773.1 Holliday junction resolvase RecU Machinery gene
  R4715_RS03415 pbp1a 706257..708416 (+) 2160 WP_001041857.1 penicillin-binding protein PBP1A -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 23098.53 Da        Isoelectric Point: 9.9801

>NTDB_id=819370 R4715_RS03410 WP_000248773.1 705664..706260(+) (recU) [Streptococcus pneumoniae strain OXT]
MVNYPHKLSSQKRQPSLSQPKNFANRGMSFEKMINATNDYYLSQGLAVIHKKPTPIQIVRVDYPQRSRAKIVEAYFRQAS
TTDYSGVYNGYYIDFEAKETKQKRAIPMKNFHPHQIQHMEQILAQQGICFVLLHFSSQQETYLLPAYDLIRFYHQDKGQK
SMPLGYIREYGYEIKAGAFPQIPYLNVIKEHLLGGKTR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=819370 R4715_RS03410 WP_000248773.1 705664..706260(+) (recU) [Streptococcus pneumoniae strain OXT]
ATGGTCAACTATCCACATAAACTTTCATCACAAAAAAGACAACCATCTCTTTCTCAACCCAAAAATTTCGCAAATCGAGG
AATGTCTTTTGAAAAGATGATCAATGCTACCAACGACTACTATTTGTCTCAGGGCTTGGCTGTTATACACAAGAAACCAA
CTCCTATTCAAATCGTACGAGTGGACTATCCACAACGAAGTCGTGCCAAGATTGTTGAAGCCTATTTTCGACAAGCTTCA
ACGACGGACTATTCTGGCGTTTATAATGGATATTACATCGACTTTGAAGCCAAGGAAACAAAACAAAAACGTGCGATTCC
GATGAAAAATTTCCATCCACATCAGATTCAGCATATGGAACAAATCCTTGCTCAACAAGGAATCTGCTTTGTCCTTCTTC
ACTTTTCTTCTCAGCAAGAAACCTACTTATTACCGGCATATGATTTGATTCGCTTCTATCATCAAGATAAGGGGCAAAAA
TCAATGCCACTTGGATATATTCGAGAATATGGATATGAAATCAAGGCTGGTGCCTTCCCTCAAATTCCCTATCTCAATGT
TATCAAAGAACATTTATTAGGTGGTAAAACAAGATGA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(26-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C1CPN7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

48.768

100

0.5