Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutX   Type   Machinery gene
Locus tag   R4715_RS00395 Genome accession   NZ_CP137108
Coordinates   93883..94347 (-) Length   154 a.a.
NCBI ID   WP_001135781.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain OXT     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 88883..99347
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4715_RS00375 - 89834..90802 (-) 969 WP_000105360.1 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha -
  R4715_RS00380 pdrM 90956..92317 (-) 1362 WP_000278538.1 sodium-coupled multidrug efflux MATE transporter PdrM -
  R4715_RS00385 - 92328..92588 (-) 261 WP_001105925.1 hypothetical protein -
  R4715_RS00390 - 92602..93870 (-) 1269 WP_000924492.1 dihydroorotase -
  R4715_RS00395 mutX 93883..94347 (-) 465 WP_001135781.1 8-oxo-dGTP diphosphatase Machinery gene
  R4715_RS00400 - 94357..95010 (-) 654 WP_000401326.1 uracil-DNA glycosylase -
  R4715_RS00405 - 95146..95793 (-) 648 WP_001810198.1 hypothetical protein -
  R4715_RS00410 - 95807..96520 (-) 714 WP_000499429.1 YjjG family noncanonical pyrimidine nucleotidase -
  R4715_RS00415 dhaM 96979..97359 (-) 381 WP_000443787.1 dihydroxyacetone kinase phosphoryl donor subunit DhaM -
  R4715_RS00420 - 97359..97433 (-) 75 Protein_84 dihydroxyacetone kinase subunit L -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17842.19 Da        Isoelectric Point: 4.2287

>NTDB_id=819345 R4715_RS00395 WP_001135781.1 93883..94347(-) (mutX) [Streptococcus pneumoniae strain OXT]
MPQLATICYIDNGKELLMLHRNKKPNDVHEGKWIGVGGKLERGETPQECATREILEETGLKAKPVLKGVITFPEFTPDLD
WYTYVFKVTEFEGDLIDCNEGTLEWVPYDEVLSKPTWEGDHTFVEWLLEDKPFFSAKFVYDGDKLLDTQVDFYE

Nucleotide


Download         Length: 465 bp        

>NTDB_id=819345 R4715_RS00395 WP_001135781.1 93883..94347(-) (mutX) [Streptococcus pneumoniae strain OXT]
ATGCCTCAGTTAGCGACGATTTGCTACATTGATAATGGGAAAGAACTGCTCATGCTCCATCGTAATAAGAAACCCAATGA
TGTCCATGAAGGGAAATGGATTGGTGTGGGTGGTAAGCTAGAGAGAGGAGAGACGCCCCAGGAATGCGCGACGCGTGAAA
TCCTTGAAGAAACAGGGCTCAAAGCCAAGCCAGTTCTAAAAGGTGTCATCACTTTTCCTGAATTTACACCAGATTTAGAC
TGGTACACCTATGTTTTTAAGGTGACGGAGTTTGAGGGCGACTTGATTGACTGCAATGAGGGGACGCTAGAATGGGTTCC
CTATGATGAGGTTTTGAGCAAGCCGACTTGGGAAGGTGACCACACCTTTGTTGAGTGGCTTTTAGAGGATAAACCCTTCT
TTTCAGCCAAGTTTGTTTATGATGGGGATAAATTGTTGGATACCCAAGTTGATTTCTATGAATAA

Domains

Predicted by InterProScan.

NUDIX domain (NUDIX)

(2-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutX Streptococcus pneumoniae R6

98.701

100

0.987