Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   QAY72_RS02445 Genome accession   NZ_CP123132
Coordinates   456163..456660 (+) Length   165 a.a.
NCBI ID   WP_001789864.1    Uniprot ID   -
Organism   Staphylococcus aureus strain GE-MSSA28     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 451163..461660
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAY72_RS02405 (QAY72_02400) - 451207..452193 (+) 987 WP_000161314.1 ROK family glucokinase -
  QAY72_RS02410 (QAY72_02405) - 452193..452522 (+) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  QAY72_RS02415 (QAY72_02410) - 452519..453142 (+) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  QAY72_RS02420 (QAY72_02415) comGA 453194..454168 (+) 975 WP_054104768.1 competence type IV pilus ATPase ComGA Machinery gene
  QAY72_RS02425 (QAY72_02420) comGB 454140..455210 (+) 1071 WP_000775708.1 competence type IV pilus assembly protein ComGB Machinery gene
  QAY72_RS02430 (QAY72_02425) comGC 455224..455535 (+) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  QAY72_RS02435 (QAY72_02430) comGD 455513..455959 (+) 447 WP_001790850.1 competence type IV pilus minor pilin ComGD Machinery gene
  QAY72_RS02440 (QAY72_02435) comGE 455946..456245 (+) 300 WP_000844413.1 hypothetical protein Machinery gene
  QAY72_RS02445 (QAY72_02440) comGF 456163..456660 (+) 498 WP_001789864.1 competence type IV pilus minor pilin ComGF Machinery gene
  QAY72_RS02450 (QAY72_02445) - 456757..456903 (+) 147 WP_001789879.1 hypothetical protein -
  QAY72_RS02455 (QAY72_02450) - 456893..457417 (+) 525 WP_100183654.1 shikimate kinase -
  QAY72_RS02460 (QAY72_02455) gcvT 457576..458667 (+) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  QAY72_RS02465 (QAY72_02460) gcvPA 458687..460033 (+) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  QAY72_RS02470 (QAY72_02465) gcvPB 460026..461498 (+) 1473 WP_088607884.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPB -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 19164.88 Da        Isoelectric Point: 10.2192

>NTDB_id=819271 QAY72_RS02445 WP_001789864.1 456163..456660(+) (comGF) [Staphylococcus aureus strain GE-MSSA28]
MILSKVTNKFVLFQKIPLLIKRHVYSINVKAFSLIEMLVAMMVISITLLIVPDLIRLSKTFLIESRDLTTVDFEFFSRDI
LDDFKGVDRNDIEIRQHRIILHKGEEMIEYKLINNKIIKVVNDRGNITMINNVTAFTANIYYKSIIKITITVKVGTNVQT
KTIYV

Nucleotide


Download         Length: 498 bp        

>NTDB_id=819271 QAY72_RS02445 WP_001789864.1 456163..456660(+) (comGF) [Staphylococcus aureus strain GE-MSSA28]
ATGATATTAAGCAAAGTGACCAACAAATTTGTGCTATTTCAAAAAATACCACTTCTTATCAAAAGACATGTATACAGTAT
TAATGTCAAAGCTTTTTCGCTCATTGAAATGTTAGTAGCGATGATGGTTATAAGTATAACTTTACTAATTGTTCCAGACT
TAATTAGACTTAGTAAAACTTTTCTAATTGAAAGTAGGGATTTAACAACTGTAGATTTCGAATTTTTCTCAAGAGATATT
CTAGATGATTTTAAAGGAGTAGATAGAAACGATATTGAAATTAGGCAACACCGTATCATTTTACATAAAGGTGAAGAAAT
GATCGAATACAAATTAATTAATAATAAAATTATTAAAGTTGTAAATGACAGAGGAAATATAACAATGATTAATAATGTTA
CAGCATTTACTGCAAATATCTACTATAAATCCATTATTAAAATAACGATAACAGTTAAAGTCGGTACAAATGTGCAGACT
AAAACTATTTATGTATAA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(67-155)

Prokaryotic N-terminal methylation motif (N_methyl)

(28-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Staphylococcus aureus MW2

100

100

1
  comGF Staphylococcus aureus N315

96.364

100

0.964