Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   QAO23_RS11280 Genome accession   NZ_CP123130
Coordinates   2333860..2334846 (-) Length   328 a.a.
NCBI ID   WP_411896816.1    Uniprot ID   -
Organism   Staphylococcus aureus strain GE-MSSA29     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2328860..2339846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAO23_RS11255 (QAO23_11260) - 2329120..2329467 (-) 348 WP_001242107.1 hypothetical protein -
  QAO23_RS11260 (QAO23_11265) - 2329653..2330246 (+) 594 WP_000224622.1 CYTH domain-containing protein -
  QAO23_RS11265 (QAO23_11270) - 2330350..2330715 (+) 366 WP_000214067.1 truncated hemoglobin YjbI -
  QAO23_RS11270 (QAO23_11275) yjbH 2330738..2331544 (+) 807 WP_000896697.1 protease adaptor protein YjbH -
  QAO23_RS11275 (QAO23_11280) pepF 2332004..2333812 (-) 1809 WP_000082725.1 oligoendopeptidase F -
  QAO23_RS11280 (QAO23_11285) coiA 2333860..2334846 (-) 987 WP_411896816.1 competence protein CoiA Machinery gene
  QAO23_RS11285 (QAO23_11290) mecA 2334967..2335686 (-) 720 WP_001217728.1 adaptor protein MecA -
  QAO23_RS11290 (QAO23_11295) spxA 2336057..2336452 (-) 396 WP_000258003.1 transcriptional regulator SpxA -
  QAO23_RS11295 (QAO23_11300) trpS 2336747..2337736 (+) 990 WP_411896817.1 tryptophan--tRNA ligase -
  QAO23_RS11300 (QAO23_11305) - 2337762..2339408 (-) 1647 WP_000277723.1 IS1182-like element ISSau3 family transposase -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38722.23 Da        Isoelectric Point: 9.6529

>NTDB_id=819249 QAO23_RS11280 WP_411896816.1 2333860..2334846(-) (coiA) [Staphylococcus aureus strain GE-MSSA29]
MLVALNGEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNESIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPITRKL
HTFNLEKKQIMMFQQIQYIGGHKYVAEKRNAKISELFNEAPCDYNAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLH
LTDQEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLESDNLNYFKLKKFIVALESKTAIIEKLINNYLNISSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=819249 QAO23_RS11280 WP_411896816.1 2333860..2334846(-) (coiA) [Staphylococcus aureus strain GE-MSSA29]
ATGTTAGTAGCTTTAAATGGAGAAAAGGAACGCGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAATCGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCAATCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATATAGGCGGGCACAAATATGTCGCTGA
AAAAAGGAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATAATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAGTTGCAT
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGAAAGTGACAATCTTAATTATTTTAAACTGAAAA
AGTTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTAGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(10-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

96.341

100

0.963
  coiA Staphylococcus aureus N315

96.341

100

0.963