Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   QAO23_RS08435 Genome accession   NZ_CP123130
Coordinates   1724389..1724835 (+) Length   148 a.a.
NCBI ID   WP_001796473.1    Uniprot ID   -
Organism   Staphylococcus aureus strain GE-MSSA29     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1719389..1729835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAO23_RS08400 (QAO23_08405) - 1719883..1720086 (+) 204 WP_000087561.1 YqgQ family protein -
  QAO23_RS08405 (QAO23_08410) - 1720083..1721069 (+) 987 WP_000161315.1 ROK family glucokinase -
  QAO23_RS08410 (QAO23_08415) - 1721069..1721398 (+) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  QAO23_RS08415 (QAO23_08420) - 1721395..1722018 (+) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  QAO23_RS08420 (QAO23_08425) comGA 1722070..1723044 (+) 975 WP_000697218.1 competence type IV pilus ATPase ComGA Machinery gene
  QAO23_RS08425 (QAO23_08430) comGB 1723016..1724086 (+) 1071 WP_000776407.1 competence type IV pilus assembly protein ComGB Machinery gene
  QAO23_RS08430 (QAO23_08435) comGC 1724100..1724411 (+) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  QAO23_RS08435 (QAO23_08440) comGD 1724389..1724835 (+) 447 WP_001796473.1 competence type IV pilus minor pilin ComGD Machinery gene
  QAO23_RS08440 (QAO23_08445) comGE 1724822..1725121 (+) 300 WP_000844413.1 hypothetical protein Machinery gene
  QAO23_RS08445 (QAO23_08450) comGF 1725039..1725536 (+) 498 WP_001838632.1 competence type IV pilus minor pilin ComGF Machinery gene
  QAO23_RS08450 (QAO23_08455) - 1725633..1725779 (+) 147 WP_001789879.1 hypothetical protein -
  QAO23_RS08455 (QAO23_08460) - 1725769..1726293 (+) 525 WP_001015116.1 shikimate kinase -
  QAO23_RS08460 (QAO23_08465) gcvT 1726452..1727543 (+) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  QAO23_RS08465 (QAO23_08470) gcvPA 1727563..1728909 (+) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17131.31 Da        Isoelectric Point: 10.3312

>NTDB_id=819240 QAO23_RS08435 WP_001796473.1 1724389..1724835(+) (comGD) [Staphylococcus aureus strain GE-MSSA29]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISLITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=819240 QAO23_RS08435 WP_001796473.1 1724389..1724835(+) (comGD) [Staphylococcus aureus strain GE-MSSA29]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTTTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTCTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGATAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

99.324

100

0.993
  comGD Staphylococcus aureus N315

99.324

100

0.993