Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   QAO41_RS09950 Genome accession   NZ_CP123126
Coordinates   2013497..2014213 (+) Length   238 a.a.
NCBI ID   WP_064127170.1    Uniprot ID   -
Organism   Staphylococcus aureus strain GE-MSSA32     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2008497..2019213
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAO41_RS09920 (QAO41_09915) - 2008714..2009340 (+) 627 WP_000522384.1 nitroreductase family protein -
  QAO41_RS09925 (QAO41_09920) - 2009701..2010486 (+) 786 WP_411896492.1 carbon-nitrogen family hydrolase -
  QAO41_RS09930 hld 2011086..2011166 (-) 81 WP_000046022.1 delta-hemolysin -
  QAO41_RS09935 (QAO41_09930) - 2011456..2012019 (+) 564 WP_001105696.1 accessory gene regulator AgrB -
  QAO41_RS09940 (QAO41_09935) agrD 2012022..2012165 (+) 144 WP_001094921.1 cyclic lactone autoinducer peptide AgrD -
  QAO41_RS09945 (QAO41_09940) agrC 2012195..2013478 (+) 1284 WP_411896493.1 quorum-sensing sensor histidine kinase AgrC -
  QAO41_RS09950 (QAO41_09945) agrA 2013497..2014213 (+) 717 WP_064127170.1 quorum-sensing response regulator AgrA Regulator
  QAO41_RS09955 (QAO41_09950) - 2014285..2014394 (+) 110 Protein_1923 hypothetical protein -
  QAO41_RS09960 (QAO41_09955) - 2014582..2015541 (-) 960 WP_411896494.1 carbohydrate kinase family protein -
  QAO41_RS09965 (QAO41_09960) - 2015538..2017022 (-) 1485 WP_000141411.1 sucrose-6-phosphate hydrolase -
  QAO41_RS09970 (QAO41_09965) - 2017171..2018121 (-) 951 WP_000790329.1 LacI family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27961.97 Da        Isoelectric Point: 6.0927

>NTDB_id=819167 QAO41_RS09950 WP_064127170.1 2013497..2014213(+) (agrA) [Staphylococcus aureus strain GE-MSSA32]
MKIFICEDDPKQRENMVTIIKNYIMIEEKPMEIALATDNPYEVLEQAKNMNDIGCYFLDIQLSTDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPVELRTRIIDCLETAHTRLQLLSRDNSVETIELKRGSNSVYVQYDDIM
FFESSTKSHRLIAHLDNRQIEFYGNLKELSQLDDRFFRCHNSFVVNRHNIESIDSKERIVYFKNKEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=819167 QAO41_RS09950 WP_064127170.1 2013497..2014213(+) (agrA) [Staphylococcus aureus strain GE-MSSA32]
ATGAAAATTTTCATTTGCGAAGACGATCCAAAACAAAGAGAAAACATGGTTACCATTATTAAAAATTATATAATGATAGA
AGAAAAGCCTATGGAAATTGCCCTCGCAACTGATAATCCTTATGAGGTGCTTGAGCAAGCTAAAAATATGAATGACATAG
GCTGTTACTTTTTAGATATTCAACTTTCAACTGATATTAATGGTATCAAATTAGGCAGTGAAATTCGTAAGCATGACCCA
GTTGGTAACATTATTTTCGTTACGAGTCACAGTGAACTTACCTATTTAACATTTGTCTACAAAGTTGCAGCGATGGATTT
TATTTTTAAAGATGATCCAGTAGAATTAAGAACTCGAATTATAGATTGTTTAGAAACTGCACATACACGTTTACAATTAT
TATCAAGAGATAATAGCGTTGAAACGATTGAATTAAAACGTGGCAGTAATTCAGTGTATGTTCAATATGATGATATTATG
TTTTTTGAATCATCAACAAAATCTCACAGACTCATTGCCCATTTAGATAACCGTCAAATTGAATTTTATGGTAATTTAAA
AGAACTGAGTCAATTAGATGATCGTTTCTTTAGATGTCATAATAGCTTTGTCGTCAATCGCCATAATATTGAATCTATAG
ATTCGAAAGAGCGAATTGTCTATTTTAAAAATAAAGAACACTGCTATGCATCGGTGAGAAACGTTAAAAAAATATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

99.16

100

0.992