Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR   Type   Regulator
Locus tag   R4702_RS04965 Genome accession   NZ_CP137106
Coordinates   990191..991084 (-) Length   297 a.a.
NCBI ID   WP_000343888.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 16P4028     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 985191..996084
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4702_RS04940 - 986678..987169 (-) 492 WP_000671990.1 hypothetical protein -
  R4702_RS04945 - 987150..987746 (-) 597 WP_000687787.1 ATP-binding cassette domain-containing protein -
  R4702_RS04950 - 987743..988225 (-) 483 WP_001232094.1 stage II sporulation protein M -
  R4702_RS04955 - 988222..989358 (-) 1137 WP_000698828.1 hypothetical protein -
  R4702_RS04960 - 989365..989661 (-) 297 WP_000837726.1 uberolysin/carnocyclin family circular bacteriocin -
  R4702_RS04965 comR 990191..991084 (-) 894 WP_000343888.1 XRE family transcriptional regulator Regulator
  R4702_RS04970 - 991105..991299 (-) 195 WP_000756776.1 hypothetical protein -
  R4702_RS04975 - 991708..991833 (-) 126 WP_000346297.1 PncF family bacteriocin immunity protein -
  R4702_RS04980 blpU 991836..992066 (-) 231 WP_001093075.1 bacteriocin-like peptide BlpU -
  R4702_RS04985 - 992269..992568 (-) 300 Protein_996 transposase family protein -
  R4702_RS04990 - 992605..992838 (-) 234 WP_000136447.1 acyl carrier protein -
  R4702_RS04995 plsX 992844..993836 (-) 993 WP_000717456.1 phosphate acyltransferase PlsX -
  R4702_RS05000 recO 993833..994603 (-) 771 WP_317810427.1 DNA repair protein RecO Machinery gene
  R4702_RS05005 - 994600..995769 (-) 1170 WP_000366345.1 pyridoxal phosphate-dependent aminotransferase -

Sequence

Protein


Download         Length: 297 a.a.        Molecular weight: 34517.01 Da        Isoelectric Point: 4.6498

>NTDB_id=819142 R4702_RS04965 WP_000343888.1 990191..991084(-) (comR) [Streptococcus pneumoniae strain 16P4028]
MDELKREIGYKIKTIRRSCGKTQIDICGDESELTIRQLARIENGQALATLPKLLLIADKLGVSLQNIVDVKVIEIPKGFL
KLKDELIHSQTYADKGRIERKEAILEEIYENYYENLPEEEQLIVDVTQARFDIYGSSDVTYGLGLVEEYFQQLLKKKYFS
VNDLLIIELYFFCCAMGLEDKEHFEELAQKVLLCSEYEDKASLVQMEKVLLSLFIQIQTEDSLIYIQTFEKIIAKTRHVF
YRPHLFLLKAKYALFVDKNILEAESFYEKAISLAELLDDQVLVQRILAEKQIDFPTT

Nucleotide


Download         Length: 894 bp        

>NTDB_id=819142 R4702_RS04965 WP_000343888.1 990191..991084(-) (comR) [Streptococcus pneumoniae strain 16P4028]
ATGGATGAGTTGAAACGTGAAATTGGTTATAAAATCAAAACTATTAGGCGATCTTGTGGAAAAACTCAGATAGATATTTG
TGGTGATGAATCAGAGTTGACGATTCGTCAGCTAGCACGTATTGAAAATGGGCAAGCTTTAGCAACACTTCCTAAATTAT
TATTGATTGCGGATAAACTTGGAGTATCATTACAGAATATTGTGGATGTTAAGGTTATAGAGATTCCAAAAGGATTCCTA
AAACTCAAAGATGAGCTGATTCATTCTCAAACCTACGCTGATAAGGGAAGAATCGAACGAAAAGAAGCTATACTTGAGGA
AATATATGAAAACTATTATGAGAATTTGCCTGAGGAAGAGCAGTTAATTGTGGATGTGACACAAGCTCGTTTTGATATTT
ATGGTAGTTCAGATGTGACCTACGGTTTAGGGTTAGTGGAAGAATATTTCCAGCAGTTATTAAAAAAGAAATATTTTTCT
GTAAATGATTTGTTGATTATTGAATTGTATTTCTTTTGTTGTGCTATGGGATTAGAAGATAAAGAACATTTTGAGGAGTT
AGCTCAAAAAGTATTGCTATGTTCAGAATATGAAGATAAGGCTAGCCTAGTTCAAATGGAAAAAGTTCTTCTGAGCCTAT
TTATCCAAATTCAGACAGAGGATAGTCTGATATATATTCAAACATTTGAGAAAATTATTGCTAAAACAAGACATGTTTTT
TACCGACCTCATCTATTTTTGCTAAAGGCAAAATATGCTTTATTTGTAGACAAGAATATTTTAGAGGCAGAAAGTTTCTA
TGAAAAGGCGATTTCTCTAGCAGAATTGCTAGACGATCAGGTATTAGTTCAGAGAATTTTAGCAGAAAAACAGATAGATT
TCCCAACAACCTGA

Domains

Predicted by InterProScan.

ComR tetratricopeptide (ComR_TPR)

(76-289)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR Streptococcus mutans UA159

36.667

100

0.37