Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   R4702_RS02465 Genome accession   NZ_CP137106
Coordinates   496748..497014 (-) Length   88 a.a.
NCBI ID   WP_001820593.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 16P4028     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 491748..502014
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4702_RS02455 metF 493308..494174 (-) 867 WP_317810193.1 methylenetetrahydrofolate reductase [NAD(P)H] -
  R4702_RS02460 metE 494238..496487 (-) 2250 WP_044812083.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  R4702_RS02465 HI0659 496748..497014 (-) 267 WP_001820593.1 helix-turn-helix domain-containing protein Machinery gene
  R4702_RS02470 - 497098..497586 (-) 489 Protein_492 transposase -
  R4702_RS02475 - 497742..498743 (+) 1002 WP_000597970.1 endonuclease/exonuclease/phosphatase family protein -
  R4702_RS02480 pheT 498811..501213 (-) 2403 WP_317810195.1 phenylalanine--tRNA ligase subunit beta -
  R4702_RS02485 - 501290..501799 (-) 510 WP_000619950.1 N-acetyltransferase -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 9670.12 Da        Isoelectric Point: 4.3934

>NTDB_id=819119 R4702_RS02465 WP_001820593.1 496748..497014(-) (HI0659) [Streptococcus pneumoniae strain 16P4028]
MEGCPSELFSKEEILESDMRVAIMSELIEARHEQGINQRKLEELSGVSQPVIARMETGESSLQLDTVLKVLTSLGKTLAV
VPLEQGKS

Nucleotide


Download         Length: 267 bp        

>NTDB_id=819119 R4702_RS02465 WP_001820593.1 496748..497014(-) (HI0659) [Streptococcus pneumoniae strain 16P4028]
TTGGAAGGATGTCCATCTGAGCTCTTTAGCAAGGAGGAAATCCTTGAAAGTGATATGCGAGTGGCTATTATGAGCGAGTT
GATTGAAGCTAGACATGAACAAGGAATCAATCAGAGAAAGCTAGAAGAACTCAGTGGAGTGAGTCAACCTGTCATAGCTA
GGATGGAAACAGGAGAGAGCAGTCTTCAGTTGGATACGGTCTTAAAAGTTCTAACCAGTCTAGGAAAGACACTAGCAGTC
GTTCCACTTGAACAGGGGAAAAGTTGA

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(28-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

55.844

87.5

0.489