Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   R8613_RS00205 Genome accession   NZ_AP026919
Coordinates   38225..38995 (+) Length   256 a.a.
NCBI ID   WP_000616162.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900700012     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 33225..43995
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8613_RS00185 (PC0012_00300) - 35145..35582 (+) 438 WP_317648308.1 CoA-binding protein -
  R8613_RS00190 (PC0012_00310) - 35623..35871 (+) 249 WP_050222721.1 hypothetical protein -
  R8613_RS00195 (PC0012_00320) - 35900..36910 (-) 1011 WP_317648311.1 YeiH family protein -
  R8613_RS00200 (PC0012_00330) - 37059..38228 (+) 1170 WP_000366378.1 pyridoxal phosphate-dependent aminotransferase -
  R8613_RS00205 (PC0012_00340) recO 38225..38995 (+) 771 WP_000616162.1 DNA repair protein RecO Machinery gene
  R8613_RS00210 (PC0012_00350) plsX 38992..39984 (+) 993 WP_000717458.1 phosphate acyltransferase PlsX -
  R8613_RS00215 (PC0012_00360) - 39990..40223 (+) 234 WP_000136447.1 acyl carrier protein -
  R8613_RS00220 - 40260..40560 (+) 301 Protein_36 transposase family protein -
  R8613_RS00225 (PC0012_00370) blpU 40762..40992 (+) 231 WP_001093075.1 bacteriocin-like peptide BlpU -
  R8613_RS00230 - 40995..41120 (+) 126 WP_000346297.1 PncF family bacteriocin immunity protein -
  R8613_RS00235 (PC0012_00380) comA 41707..43860 (+) 2154 WP_317648315.1 peptide cleavage/export ABC transporter ComA Regulator

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29788.29 Da        Isoelectric Point: 5.3615

>NTDB_id=81911 R8613_RS00205 WP_000616162.1 38225..38995(+) (recO) [Streptococcus pneumoniae strain PZ900700012]
MIQSITSQGLVLYNRNFREDDKLVKIFTEQVGKRMFFVKHAGQSKLAPVIQPLVLARFLLRINDDGLSYIEDYHEVMTFP
KINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLQKTLELMEAGLDYQVLTNIFEIQILTRFGISLNFNECVFCHRVG
QAFDFSFKYGACLCPEHYHEDERRCHLNPNIPYLLNQFQAIDFETLETISLKPGIKQELRQFMDQLYEEYVGIHLKSKKF
IDSLADWGQLLKEEKK

Nucleotide


Download         Length: 771 bp        

>NTDB_id=81911 R8613_RS00205 WP_000616162.1 38225..38995(+) (recO) [Streptococcus pneumoniae strain PZ900700012]
ATGATTCAGTCTATCACGAGTCAAGGCTTGGTGCTTTACAATCGCAATTTTCGTGAGGATGACAAGCTCGTCAAAATTTT
TACAGAGCAGGTTGGCAAACGCATGTTTTTTGTCAAACACGCTGGTCAGTCTAAGCTGGCGCCTGTTATTCAGCCCTTGG
TGCTGGCACGATTTCTCTTGCGAATCAATGATGACGGACTCAGTTACATCGAAGACTATCATGAGGTCATGACTTTTCCC
AAGATTAATAGTGACCTCTTTGTCATGGCCTATGCGACCTATGTGGCAGCTCTTGCAGATGCTAGTTTGCAGGACAATCA
GCAGGATGCTCCCTTGTTTGCTTTTTTGCAAAAGACTTTGGAGTTGATGGAAGCAGGCTTGGATTATCAGGTTTTGACCA
ATATTTTTGAAATTCAAATTTTGACTCGATTTGGAATCAGCCTCAATTTTAATGAGTGTGTCTTCTGCCATCGGGTTGGT
CAGGCTTTTGACTTTTCTTTCAAATATGGAGCCTGTCTCTGTCCAGAGCATTATCATGAGGATGAGAGACGTTGCCATCT
CAATCCCAATATCCCCTATCTGCTCAATCAATTTCAAGCTATTGATTTTGAGACTTTGGAAACCATTTCGCTCAAGCCTG
GAATCAAGCAAGAGCTACGCCAATTTATGGATCAACTATATGAAGAGTACGTTGGGATTCACCTAAAATCAAAGAAATTT
ATTGATTCCCTAGCAGACTGGGGACAATTACTAAAAGAGGAAAAGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(4-72)

Recombination protein O C terminal (RecO_C)

(84-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

99.609

100

0.996

Multiple sequence alignment