Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   R4702_RS00465 Genome accession   NZ_CP137106
Coordinates   101289..102359 (+) Length   356 a.a.
NCBI ID   WP_000817884.1    Uniprot ID   C1C7D0
Organism   Streptococcus pneumoniae strain 16P4028     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 96289..107359
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4702_RS10950 - 97184..97315 (+) 132 WP_088800136.1 LPXTG cell wall anchor domain-containing protein -
  R4702_RS00450 ylqF 97522..98373 (+) 852 WP_000201286.1 ribosome biogenesis GTPase YlqF -
  R4702_RS00455 - 98360..99139 (+) 780 WP_000201133.1 ribonuclease HII -
  R4702_RS00460 - 99155..100705 (+) 1551 WP_000392537.1 ClC family H(+)/Cl(-) exchange transporter -
  R4702_RS00465 xerS 101289..102359 (+) 1071 WP_000817884.1 tyrosine recombinase XerS Machinery gene
  R4702_RS00470 - 102432..103421 (-) 990 WP_000873991.1 lipoate--protein ligase -
  R4702_RS00475 lpdA 103485..105188 (-) 1704 WP_001162928.1 dihydrolipoyl dehydrogenase -
  R4702_RS00480 - 105234..106277 (-) 1044 WP_317810015.1 dihydrolipoamide acetyltransferase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41144.18 Da        Isoelectric Point: 9.6220

>NTDB_id=819102 R4702_RS00465 WP_000817884.1 101289..102359(+) (xerS) [Streptococcus pneumoniae strain 16P4028]
MKREILLERIDKLKQLMPWYVLEYYQSKLAVPYSFTTLYEYLKEYDRFFSWVLESGISNADKISDIPLSVLENMSKKDME
SFILYLRERPLLNANTTKQGVSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAARAENIKQK
LFLGDETEGFLTYIDQEHPQQLSNRALSSFNKNKERDLAIIALLLASGVRLSEAVNLDLRDLNLKMMVIDVTRKGGKRDS
VNVAAFAKPYLENYLAIRNQRYKTEKTDTALFLTLYRGVPNRIDASSVEKMVAKYSEDFKVRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVSDEQKNALDSL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=819102 R4702_RS00465 WP_000817884.1 101289..102359(+) (xerS) [Streptococcus pneumoniae strain 16P4028]
ATGAAACGTGAGATTTTACTGGAACGAATCGACAAACTAAAACAACTCATGCCCTGGTATGTTCTGGAATACTACCAATC
TAAACTGGCTGTGCCCTACAGTTTTACAACCCTGTACGAATACCTTAAGGAATATGACCGATTTTTCAGCTGGGTTTTGG
AGTCTGGTATTTCAAACGCTGATAAAATATCCGATATTCCTTTATCAGTTTTGGAAAATATGTCTAAGAAAGACATGGAA
TCCTTTATCCTTTATCTACGTGAACGTCCCTTGCTGAATGCTAATACAACAAAACAAGGTGTTTCACAGACAACTATCAA
TCGAACCTTATCAGCACTTTCTAGTCTTTACAAGTATCTAACCGAGGAGGTTGAAAACGATCAGGGGGAACCTTATTTCT
ATCGTAATGTAATGAAAAAAGTTTCAACCAAGAAAAAGAAAGAAACCCTTGCTGCCAGAGCTGAAAATATCAAGCAAAAA
CTCTTTCTAGGTGATGAAACAGAAGGTTTTCTAACTTATATCGATCAAGAGCACCCACAACAGCTTTCAAATCGAGCTCT
CTCATCATTCAACAAAAATAAAGAACGAGATTTAGCCATTATTGCCCTTCTCTTGGCATCTGGTGTTCGCTTATCTGAAG
CTGTTAATCTAGATCTAAGAGATCTCAATCTAAAAATGATGGTTATTGATGTTACTCGAAAAGGTGGCAAACGTGACTCA
GTCAATGTCGCTGCTTTTGCTAAACCTTATTTAGAGAATTATCTGGCCATTCGGAATCAACGCTATAAAACGGAAAAAAC
AGATACAGCCCTTTTTTTAACTCTCTACAGAGGTGTTCCTAATCGTATCGATGCTTCTAGCGTTGAGAAAATGGTTGCTA
AATACTCAGAGGATTTTAAAGTGCGTGTAACACCCCATAAACTGCGCCATACACTAGCAACTAGGCTCTATGATGCGACT
AAATCACAAGTTTTAGTCAGTCACCAACTAGGACATGCTAGCACACAAGTCACTGACCTCTATACCCATATTGTTAGTGA
TGAACAAAAGAATGCTCTGGATAGTTTATGA

Domains

Predicted by InterProScan.

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_1)

(71-123)

Phage integrase family (Phage_integrase)

(188-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C1C7D0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

99.719

100

0.997