Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   R4699_RS09025 Genome accession   NZ_CP137105
Coordinates   1790439..1791209 (-) Length   256 a.a.
NCBI ID   WP_000616159.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 16H2092     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1785439..1796209
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4699_RS08995 comA 1785574..1787727 (-) 2154 WP_000668299.1 peptide cleavage/export ABC transporter ComA Regulator
  R4699_RS09000 - 1788314..1788439 (-) 126 WP_000346297.1 PncF family bacteriocin immunity protein -
  R4699_RS09005 blpU 1788442..1788672 (-) 231 WP_001093075.1 bacteriocin-like peptide BlpU -
  R4699_RS09010 - 1788875..1789174 (-) 300 Protein_1771 transposase family protein -
  R4699_RS09015 - 1789211..1789444 (-) 234 WP_000136447.1 acyl carrier protein -
  R4699_RS09020 plsX 1789450..1790442 (-) 993 WP_000717456.1 phosphate acyltransferase PlsX -
  R4699_RS09025 recO 1790439..1791209 (-) 771 WP_000616159.1 DNA repair protein RecO Machinery gene
  R4699_RS09030 - 1791206..1792375 (-) 1170 WP_000366376.1 pyridoxal phosphate-dependent aminotransferase -
  R4699_RS09035 - 1792524..1793534 (+) 1011 WP_000009173.1 YeiH family protein -
  R4699_RS09040 - 1793563..1793946 (-) 384 WP_317785006.1 hypothetical protein -
  R4699_RS09045 - 1793987..1794424 (-) 438 WP_000076480.1 CoA-binding protein -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29764.33 Da        Isoelectric Point: 5.6115

>NTDB_id=819062 R4699_RS09025 WP_000616159.1 1790439..1791209(-) (recO) [Streptococcus pneumoniae strain 16H2092]
MIQSITSQGLVLYNRNFREDDKLVKIFTEQVGKCMFFVKHAGQSKLAPVIQPLVLARFLLRINDDGLSYIEDYHEVMTFP
KINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLQKTLELMETGLDYQVLTNIFEIQILTRFGISLNFNECVFCHRVG
QAFDFSFKYGACLCPEHYHEDKRRCHLNPNIPYLLNQFQAIDFETLETISLKPGIKQELRQFMDQLYEEYVGIHLKSKKF
IDSLADWGQLLKEEKK

Nucleotide


Download         Length: 771 bp        

>NTDB_id=819062 R4699_RS09025 WP_000616159.1 1790439..1791209(-) (recO) [Streptococcus pneumoniae strain 16H2092]
ATGATTCAGTCTATCACGAGTCAAGGCTTGGTGCTTTACAATCGCAATTTTCGTGAGGATGACAAGCTCGTCAAAATTTT
TACAGAGCAGGTTGGCAAATGCATGTTTTTTGTCAAACACGCTGGTCAGTCTAAGCTGGCGCCTGTTATTCAGCCCTTGG
TGCTGGCACGATTTCTCTTGCGAATCAATGATGACGGACTCAGTTACATCGAAGACTATCATGAGGTCATGACTTTTCCC
AAGATTAATAGTGACCTCTTTGTCATGGCCTATGCGACCTATGTGGCAGCTCTTGCAGATGCTAGTTTGCAGGACAATCA
GCAGGATGCTCCCTTGTTTGCTTTTTTGCAAAAGACTTTGGAGTTGATGGAAACAGGCTTGGATTATCAGGTTTTGACCA
ATATTTTTGAAATTCAAATTTTGACTCGATTTGGAATCAGCCTCAATTTTAATGAGTGTGTCTTCTGCCATCGGGTTGGT
CAGGCTTTTGACTTTTCTTTCAAATATGGAGCCTGCCTCTGTCCAGAGCATTATCATGAGGATAAGAGACGTTGTCATCT
CAATCCCAATATCCCCTATCTGCTCAATCAATTTCAAGCTATTGATTTTGAGACTTTGGAGACCATTTCGCTCAAGCCTG
GAATCAAGCAAGAGCTACGCCAATTTATGGATCAATTATATGAAGAGTACGTTGGGATTCACCTAAAATCAAAGAAATTT
ATTGATTCCCTAGCAGACTGGGGACAATTACTAAAAGAGGAAAAGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(4-72)

Recombination protein O C terminal (RecO_C)

(84-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

98.438

100

0.984