Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   R4699_RS03805 Genome accession   NZ_CP137105
Coordinates   750079..751149 (-) Length   356 a.a.
NCBI ID   WP_050104889.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 16H2092     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 745079..756149
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4699_RS03790 - 746161..747204 (+) 1044 WP_000752705.1 dihydrolipoamide acetyltransferase -
  R4699_RS03795 lpdA 747250..748953 (+) 1704 WP_050104888.1 dihydrolipoyl dehydrogenase -
  R4699_RS03800 - 749017..750006 (+) 990 WP_000873985.1 lipoate--protein ligase -
  R4699_RS03805 xerS 750079..751149 (-) 1071 WP_050104889.1 tyrosine recombinase XerS Machinery gene
  R4699_RS03810 - 751733..753283 (-) 1551 WP_000392544.1 ClC family H(+)/Cl(-) exchange transporter -
  R4699_RS03815 - 753299..754078 (-) 780 WP_000201135.1 ribonuclease HII -
  R4699_RS03820 ylqF 754065..754916 (-) 852 WP_000201315.1 ribosome biogenesis GTPase YlqF -
  R4699_RS03825 - 754998..755183 (+) 186 WP_075825865.1 hypothetical protein -
  R4699_RS10775 - 755147..755323 (-) 177 WP_078102590.1 LPXTG cell wall anchor domain-containing protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41172.19 Da        Isoelectric Point: 9.5405

>NTDB_id=819019 R4699_RS03805 WP_050104889.1 750079..751149(-) (xerS) [Streptococcus pneumoniae strain 16H2092]
MKREILLERIDKLKQLMPWYVLEYYQSKLAVPYSFTTLYEYLKEYDRFFSWVLESGISNADKISDIPLSVLENMSKKDME
SFILYLRERPLLNANTTKQGVSQTTINRTLSALSSLYKYLTEEVEDDQGEPYFYRNVMKKVSTKKKKETLAARAENIKQK
LFLGDETEGFLTYIDQEHPQQLSNRALSSFNKNKERDLAIIALLLASGVRLSEAVNLDLRDLNLKMMVIDVTRKGGKRDS
VNVAAFAKPYLENYLAIRNQRYKTEKTDTALFLTLYRGVPNRIDASSVEKMVAKYSEDFKVRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDSL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=819019 R4699_RS03805 WP_050104889.1 750079..751149(-) (xerS) [Streptococcus pneumoniae strain 16H2092]
ATGAAACGTGAGATTTTACTGGAACGAATCGACAAACTAAAACAACTCATGCCCTGGTATGTTCTGGAATACTACCAATC
TAAACTGGCTGTGCCCTACAGTTTTACAACCCTGTACGAATACCTTAAGGAATATGACCGATTTTTCAGCTGGGTTTTGG
AGTCTGGTATTTCAAACGCTGATAAAATATCCGATATTCCTTTATCAGTTTTGGAAAATATGTCTAAGAAAGACATGGAA
TCCTTTATCCTTTATCTACGTGAACGTCCCTTGCTGAATGCTAATACAACAAAACAAGGTGTTTCACAGACAACTATCAA
TCGAACCTTATCAGCACTTTCTAGTCTTTACAAGTATCTAACCGAGGAGGTTGAAGACGATCAGGGGGAACCTTATTTCT
ATCGTAATGTAATGAAAAAAGTTTCAACCAAGAAAAAGAAAGAAACCCTTGCTGCCAGAGCTGAAAATATCAAGCAAAAA
CTCTTTCTAGGTGATGAAACAGAAGGTTTTCTAACTTATATCGATCAAGAGCACCCACAACAGCTTTCAAATCGAGCTCT
CTCATCATTCAACAAAAATAAAGAACGAGATTTAGCCATTATTGCCCTTCTCTTGGCATCTGGTGTTCGCTTATCTGAAG
CTGTTAATCTAGATCTAAGAGATCTCAATCTAAAAATGATGGTTATTGATGTTACTCGAAAAGGTGGCAAACGTGACTCA
GTCAATGTCGCTGCTTTTGCTAAACCTTATTTAGAGAATTATCTGGCCATTCGGAATCAACGCTATAAAACGGAAAAAAC
AGATACAGCCCTTTTTTTAACTCTCTACAGAGGTGTTCCTAATCGTATCGATGCTTCTAGCGTTGAGAAAATGGTTGCTA
AATACTCAGAGGATTTTAAAGTACGTGTAACACCCCATAAACTGCGCCATACACTAGCAACTAGGCTCTATGATGCGACT
AAATCACAAGTTTTAGTCAGTCACCAACTAGGACATGCCAGCACACAAGTCACTGACCTCTATACCCATATTGTTAATGA
TGAACAAAAGAATGCTCTGGATAGTTTATGA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(188-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_1)

(71-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

99.719

100

0.997