Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   R4708_RS07745 Genome accession   NZ_CP137104
Coordinates   1492842..1493801 (-) Length   319 a.a.
NCBI ID   WP_000778475.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain LM     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1487842..1498801
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4708_RS07715 scpB 1488341..1488910 (+) 570 WP_000105310.1 SMC-Scp complex subunit ScpB -
  R4708_RS07720 - 1488897..1489619 (+) 723 WP_001222228.1 pseudouridine synthase -
  R4708_RS07725 yidD 1489619..1489861 (+) 243 WP_000821615.1 membrane protein insertion efficiency factor YidD -
  R4708_RS07730 - 1490086..1491051 (-) 966 WP_000858251.1 siderophore ABC transporter substrate-binding protein -
  R4708_RS07735 - 1491147..1491899 (-) 753 WP_000764303.1 ABC transporter ATP-binding protein -
  R4708_RS07740 - 1491896..1492852 (-) 957 WP_001193665.1 iron chelate uptake ABC transporter family permease subunit -
  R4708_RS07745 ceuB 1492842..1493801 (-) 960 WP_000778475.1 ABC transporter permease Machinery gene
  R4708_RS07750 - 1494098..1494292 (-) 195 WP_001838026.1 hypothetical protein -
  R4708_RS07755 galE 1494289..1495008 (-) 720 WP_001814725.1 UDP-glucose 4-epimerase GalE -
  R4708_RS07760 pepA 1495409..1496473 (+) 1065 WP_000209199.1 glutamyl aminopeptidase -
  R4708_RS07765 - 1496495..1496791 (+) 297 WP_000230149.1 bacteriocin immunity protein -
  R4708_RS07770 - 1497473..1497916 (+) 444 WP_000872566.1 MarR family winged helix-turn-helix transcriptional regulator -
  R4708_RS07775 - 1497920..1498684 (+) 765 WP_000082879.1 nuclear transport factor 2 family protein -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 35391.28 Da        Isoelectric Point: 9.2573

>NTDB_id=818950 R4708_RS07745 WP_000778475.1 1492842..1493801(-) (ceuB) [Streptococcus pneumoniae strain LM]
MKLSYYLIGLLLLLVFLSISIGTSDFSWGKLFDFDQQTWLLFQESRLPRTISILLTASSMSMAGLLMQTITQNQFAAPST
VGTTEAAKLGMVLSLFVFPSASLTQKMLFAFVSSIVFTLFFLAFMTIFTVKERWMLPLIGIIYSGIIGSVTEVIAYRFNL
VQSMTAWTQGSFSMIQTHQYEWLFLGLIILITVWKLSQTFTIMNLGKETSESLGISYSLLEKLALFLVALTTSVTMITVG
GLPFLGVIVPNLVRKCYGDNLSQTKLMVALVGANLVLACDILSRVLIRPYELSVSLLLGIIGSLVFILLLWRGGRKDAD

Nucleotide


Download         Length: 960 bp        

>NTDB_id=818950 R4708_RS07745 WP_000778475.1 1492842..1493801(-) (ceuB) [Streptococcus pneumoniae strain LM]
ATGAAACTTTCTTATTATTTAATTGGCTTACTTCTACTCCTAGTCTTTCTCTCTATTAGCATTGGGACCAGTGATTTTTC
ATGGGGAAAGCTATTTGATTTCGACCAGCAGACCTGGCTCCTCTTTCAAGAGTCCCGTCTCCCAAGAACTATCAGTATTC
TCCTGACTGCCTCTAGTATGAGTATGGCAGGCCTTCTCATGCAGACTATTACCCAAAATCAGTTTGCTGCACCGAGTACA
GTTGGAACGACTGAAGCCGCCAAACTGGGAATGGTGCTGAGCCTTTTTGTCTTTCCATCGGCTAGTCTGACCCAAAAGAT
GCTCTTCGCTTTTGTTTCATCCATCGTATTCACCCTCTTCTTCCTAGCCTTTATGACCATTTTTACTGTAAAGGAAAGGT
GGATGTTGCCTCTGATTGGGATCATCTATAGCGGGATTATCGGCTCAGTCACAGAAGTTATCGCCTATCGTTTCAATCTG
GTTCAGAGTATGACTGCCTGGACCCAGGGCTCCTTCTCCATGATTCAGACCCATCAGTATGAGTGGCTCTTCTTAGGCCT
CATCATCCTGATAACCGTTTGGAAATTATCCCAAACCTTCACCATCATGAATCTAGGGAAAGAAACCAGCGAGAGTTTGG
GGATTTCCTACTCCCTACTTGAAAAACTGGCCCTCTTTCTGGTGGCGCTAACGACAAGCGTCACCATGATTACCGTGGGT
GGCCTACCATTTCTCGGAGTTATCGTTCCCAATCTTGTTCGCAAGTGCTATGGAGATAATCTAAGTCAAACCAAACTCAT
GGTCGCACTGGTTGGTGCCAATCTAGTTCTGGCTTGCGATATCCTATCCCGAGTTCTGATTAGGCCCTATGAGTTGTCTG
TCAGTCTCTTGCTAGGAATCATCGGTAGTCTCGTCTTTATCCTACTTCTCTGGAGAGGGGGACGAAAAGATGCAGACTAA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(10-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

37.419

97.179

0.364