Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   R4708_RS07665 Genome accession   NZ_CP137104
Coordinates   1478770..1479480 (-) Length   236 a.a.
NCBI ID   WP_000760673.1    Uniprot ID   A0A0H2URH4
Organism   Streptococcus pneumoniae strain LM     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1473770..1484480
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4708_RS07645 - 1474578..1475504 (+) 927 WP_001291293.1 ATP-binding cassette domain-containing protein -
  R4708_RS07650 - 1475579..1475764 (-) 186 Protein_1465 transposase -
  R4708_RS07655 - 1475957..1477303 (-) 1347 WP_001821303.1 IS1380-like element ISSpn5 family transposase -
  R4708_RS07660 - 1477470..1478613 (-) 1144 Protein_1467 transposase -
  R4708_RS07665 treR 1478770..1479480 (-) 711 WP_000760673.1 trehalose operon repressor Regulator
  R4708_RS07670 treP 1479665..1481632 (+) 1968 WP_000514329.1 PTS system trehalose-specific EIIBC component -
  R4708_RS07675 treC 1481810..1483435 (+) 1626 WP_000171220.1 alpha,alpha-phosphotrehalase -
  R4708_RS07680 - 1483691..1483939 (+) 249 WP_000364990.1 YneF family protein -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27607.78 Da        Isoelectric Point: 8.9698

>NTDB_id=818949 R4708_RS07665 WP_000760673.1 1478770..1479480(-) (treR) [Streptococcus pneumoniae strain LM]
MKKYQQLFKQIQETIQNETYAVGDFLPSEHDLMEQYQVSRDTVRKALSLLQEEGLIKKIRGQGSQVVKEETVNFPVSNLT
SYQELVKELGLRSKTNVVSLDKIIIDKKSSLITGFPEFRMVWKVVRQRVVDDLVSVLDTDYLDMELIPNLTRQIAEQSIY
SYIENGLKLLIDYAQKEITIDHSSDRDKILMDIGKDPYVVSIKSKVYLQDGRQFQFTESRHKLEKFRFVDFAKRKK

Nucleotide


Download         Length: 711 bp        

>NTDB_id=818949 R4708_RS07665 WP_000760673.1 1478770..1479480(-) (treR) [Streptococcus pneumoniae strain LM]
ATGAAGAAATACCAACAATTATTTAAGCAAATCCAAGAAACCATTCAAAACGAGACTTACGCTGTCGGAGATTTCCTTCC
TAGCGAGCACGACCTTATGGAGCAATATCAAGTGAGTCGTGATACCGTCCGAAAGGCCCTGTCTCTCCTCCAAGAGGAAG
GATTGATCAAAAAGATAAGAGGGCAAGGTTCTCAAGTCGTCAAAGAAGAAACCGTCAATTTCCCTGTATCCAACCTAACC
AGCTACCAAGAACTAGTTAAAGAACTTGGACTGCGCTCTAAAACCAACGTGGTCAGTCTGGACAAGATTATTATTGATAA
AAAATCCTCACTGATAACCGGTTTCCCAGAGTTTCGGATGGTTTGGAAGGTGGTCCGCCAGCGTGTGGTGGATGATCTGG
TATCCGTTCTGGATACAGACTATCTGGATATGGAACTCATCCCAAATCTCACTCGCCAAATTGCTGAGCAGTCTATCTAT
TCTTATATAGAAAATGGCCTCAAACTCCTTATTGATTATGCTCAGAAGGAAATCACCATTGACCACTCAAGCGACCGAGA
CAAGATTCTCATGGACATTGGCAAAGACCCTTATGTCGTTTCGATTAAATCAAAAGTCTATCTCCAAGACGGACGCCAAT
TTCAGTTTACCGAAAGTCGCCATAAGTTAGAGAAATTTAGATTTGTAGATTTTGCAAAACGCAAGAAATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(89-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2URH4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

59.322

100

0.593