Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   R4708_RS05030 Genome accession   NZ_CP137104
Coordinates   1012766..1013536 (-) Length   256 a.a.
NCBI ID   WP_000616166.1    Uniprot ID   Q8DRN4
Organism   Streptococcus pneumoniae strain LM     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1007766..1018536
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4708_RS05000 comA 1007901..1010054 (-) 2154 WP_000668291.1 peptide cleavage/export ABC transporter ComA Regulator
  R4708_RS05005 - 1010641..1010766 (-) 126 WP_000346297.1 PncF family bacteriocin immunity protein -
  R4708_RS05010 blpU 1010769..1010999 (-) 231 WP_001093071.1 bacteriocin-like peptide BlpU -
  R4708_RS05015 - 1011202..1011501 (-) 300 Protein_999 transposase family protein -
  R4708_RS05020 - 1011538..1011771 (-) 234 WP_000136447.1 acyl carrier protein -
  R4708_RS05025 plsX 1011777..1012769 (-) 993 WP_000717456.1 phosphate acyltransferase PlsX -
  R4708_RS05030 recO 1012766..1013536 (-) 771 WP_000616166.1 DNA repair protein RecO Machinery gene
  R4708_RS05035 - 1013533..1014702 (-) 1170 WP_000366375.1 pyridoxal phosphate-dependent aminotransferase -
  R4708_RS05040 - 1014851..1015861 (+) 1011 WP_000009178.1 YeiH family protein -
  R4708_RS05045 - 1015890..1016093 (-) 204 WP_001821609.1 hypothetical protein -
  R4708_RS05050 - 1016134..1016571 (-) 438 WP_000076479.1 CoA-binding protein -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29818.32 Da        Isoelectric Point: 5.3615

>NTDB_id=818903 R4708_RS05030 WP_000616166.1 1012766..1013536(-) (recO) [Streptococcus pneumoniae strain LM]
MIQSITSQGLVLYNRNFREDDKLVKIFTEQVGKRMFFVKHAGQSKLAPVIQPLVLARFLLRINDDGLSYIEDYHEVMTFP
KINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLQKTLELMEAGLDYQVLTNIFEIQILTRFGISLNFNECVFCHRVG
QAFDFSFKYGTCLCPEHYHEDERRCHLNPNIPYLLNQFQAIDFETLETISLKPGIKQELRQFMDQLYEEYVGIHLKSKKF
IDSLADWGQLLKEEKK

Nucleotide


Download         Length: 771 bp        

>NTDB_id=818903 R4708_RS05030 WP_000616166.1 1012766..1013536(-) (recO) [Streptococcus pneumoniae strain LM]
ATGATTCAGTCTATCACGAGTCAAGGCTTGGTGCTTTACAATCGCAATTTTCGTGAGGATGACAAGCTCGTCAAAATTTT
TACAGAGCAGGTTGGCAAACGCATGTTTTTTGTCAAACACGCTGGTCAGTCTAAGCTGGCGCCTGTTATTCAGCCCTTGG
TGCTGGCACGATTTCTCTTGCGAATCAATGATGACGGACTCAGTTACATCGAAGACTATCATGAGGTCATGACTTTTCCC
AAGATTAATAGTGACCTCTTTGTCATGGCCTATGCGACCTATGTGGCAGCTCTTGCAGATGCTAGTTTGCAGGACAATCA
GCAGGATGCTCCCTTGTTTGCTTTTTTGCAAAAGACTTTGGAGTTGATGGAAGCAGGCTTGGATTATCAGGTTTTGACCA
ATATTTTTGAAATTCAAATTTTGACTCGATTTGGAATCAGCCTCAATTTTAATGAGTGTGTCTTCTGCCATCGGGTTGGT
CAGGCTTTTGACTTTTCTTTCAAATATGGAACCTGTCTCTGTCCAGAGCATTATCATGAGGATGAGAGACGTTGCCATCT
CAATCCCAATATCCCCTATCTGCTCAATCAATTTCAAGCTATTGATTTTGAGACTTTGGAGACCATTTCGCTCAAGCCTG
GAATCAAGCAAGAGCTACGCCAATTTATGGATCAACTATATGAAGAGTACGTTGGGATTCACCTAAAATCAAAGAAATTT
ATTGATTCCCTAGCAGACTGGGGACAATTACTAAAAGAGGAAAAGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(84-238)

Recombination protein O N terminal (RecO_N)

(4-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8DRN4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

100

100

1