Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   QAO28_RS05620 Genome accession   NZ_CP123104
Coordinates   1110550..1111536 (-) Length   328 a.a.
NCBI ID   WP_000959284.1    Uniprot ID   -
Organism   Staphylococcus aureus strain IT-MSSA53     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1105550..1116536
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAO28_RS05595 (QAO28_05585) - 1105809..1106156 (-) 348 WP_001242102.1 hypothetical protein -
  QAO28_RS05600 (QAO28_05590) - 1106342..1106935 (+) 594 WP_000224622.1 CYTH domain-containing protein -
  QAO28_RS05605 (QAO28_05595) - 1107039..1107404 (+) 366 WP_000214065.1 truncated hemoglobin YjbI -
  QAO28_RS05610 (QAO28_05600) yjbH 1107427..1108233 (+) 807 WP_000896697.1 protease adaptor protein YjbH -
  QAO28_RS05615 (QAO28_05605) pepF 1108694..1110502 (-) 1809 WP_000082725.1 oligoendopeptidase F -
  QAO28_RS05620 (QAO28_05610) coiA 1110550..1111536 (-) 987 WP_000959284.1 competence protein CoiA Machinery gene
  QAO28_RS05625 (QAO28_05615) mecA 1111657..1112376 (-) 720 WP_001217728.1 adaptor protein MecA -
  QAO28_RS05630 (QAO28_05620) spxA 1112747..1113142 (-) 396 WP_000258003.1 transcriptional regulator SpxA -
  QAO28_RS05635 (QAO28_05625) trpS 1113437..1114426 (+) 990 WP_000448941.1 tryptophan--tRNA ligase -
  QAO28_RS05640 (QAO28_05630) opp4C 1114468..1115349 (-) 882 WP_001180280.1 oligopeptide ABC transporter permease -
  QAO28_RS05645 (QAO28_05635) opp4B 1115363..1116325 (-) 963 WP_000593417.1 oligopeptide ABC transporter permease -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38810.39 Da        Isoelectric Point: 9.5881

>NTDB_id=818776 QAO28_RS05620 WP_000959284.1 1110550..1111536(-) (coiA) [Staphylococcus aureus strain IT-MSSA53]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSLFINPFTRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLVSDNLNYFKLKKFIVGLESKTAIIEKLINNYLNICSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=818776 QAO28_RS05620 WP_000959284.1 1110550..1111536(-) (coiA) [Staphylococcus aureus strain IT-MSSA53]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTTTATTTATTAATCCATTCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGGAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAGTGACAATCTTAATTATTTTAAACTGAAAA
AGTTTATTGTTGGTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

98.78

100

0.988
  coiA Staphylococcus aureus N315

98.171

100

0.982