Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   QAY62_RS02545 Genome accession   NZ_CP123097
Coordinates   473333..474403 (+) Length   356 a.a.
NCBI ID   WP_000776412.1    Uniprot ID   -
Organism   Staphylococcus aureus strain MRSA-ATCC43300     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 468333..479403
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAY62_RS02515 (QAY62_02500) - 468756..470219 (+) 1464 WP_001017867.1 rhomboid family protein -
  QAY62_RS02520 (QAY62_02505) - 470200..470403 (+) 204 WP_000087561.1 YqgQ family protein -
  QAY62_RS02525 (QAY62_02510) - 470400..471386 (+) 987 WP_000161314.1 ROK family glucokinase -
  QAY62_RS02530 (QAY62_02515) - 471386..471715 (+) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  QAY62_RS02535 (QAY62_02520) - 471712..472335 (+) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  QAY62_RS02540 (QAY62_02525) comGA 472387..473361 (+) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  QAY62_RS02545 (QAY62_02530) comGB 473333..474403 (+) 1071 WP_000776412.1 competence type IV pilus assembly protein ComGB Machinery gene
  QAY62_RS02550 (QAY62_02535) comGC 474417..474728 (+) 312 WP_061843224.1 competence type IV pilus major pilin ComGC Machinery gene
  QAY62_RS02555 (QAY62_02540) comGD 474706..475152 (+) 447 WP_001791207.1 competence type IV pilus minor pilin ComGD Machinery gene
  QAY62_RS02560 (QAY62_02545) comGE 475139..475438 (+) 300 WP_000844413.1 hypothetical protein Machinery gene
  QAY62_RS02565 (QAY62_02550) comGF 475356..475853 (+) 498 WP_001794328.1 competence type IV pilus minor pilin ComGF Machinery gene
  QAY62_RS02570 (QAY62_02555) - 475950..476096 (+) 147 WP_001789879.1 hypothetical protein -
  QAY62_RS02575 (QAY62_02560) - 476086..476610 (+) 525 WP_001015125.1 shikimate kinase -
  QAY62_RS02580 (QAY62_02565) gcvT 476769..477860 (+) 1092 WP_000093347.1 glycine cleavage system aminomethyltransferase GcvT -
  QAY62_RS02585 (QAY62_02570) gcvPA 477880..479226 (+) 1347 WP_000019697.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41429.85 Da        Isoelectric Point: 10.1030

>NTDB_id=818638 QAY62_RS02545 WP_000776412.1 473333..474403(+) (comGB) [Staphylococcus aureus strain MRSA-ATCC43300]
MKLQWINTFKLHSKKRQLSKAQQIDLLSNLCNLLKYGFTLYQSFQFLNLQMTYKNKQLGTTILSEISNGAPCNKILSLIG
YSDTIVLQVYLAERFGNIIDVLEETVNYMKVNRKSEQRLLKTLQYPLILVSIFIAMIIILNLTVIPQFQQLYTSMNIQLS
SFQKTLSFFITSLPTIIVVMLIIVSMLAIIMKLIYNNLNMLNKINFVMKLPLISGYFQLFKTYFVTNELVLFYKNGITLQ
SIVDVYINHSSDPFRQFLGKYLLTYSEMGYGLPQILEKLKCFKPQLIKFVLQGEKRGKLEVELKLYSQILVKQIEDKAIK
QTQFLQPILFLILGLFIVAIYLVIMLPMFQMMQSIK

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=818638 QAY62_RS02545 WP_000776412.1 473333..474403(+) (comGB) [Staphylococcus aureus strain MRSA-ATCC43300]
GTGAAACTACAATGGATAAATACATTTAAACTACATTCTAAGAAGCGACAATTAAGTAAGGCCCAACAAATCGATTTACT
TTCAAATTTATGTAATTTGTTGAAATATGGTTTCACTCTGTATCAAAGTTTTCAATTTTTAAATCTTCAAATGACATATA
AAAATAAGCAATTAGGTACCACCATTCTAAGTGAAATTTCAAATGGTGCACCATGCAATAAGATATTATCACTGATAGGT
TATAGCGATACTATCGTCCTGCAAGTATATTTGGCAGAAAGATTTGGCAATATCATAGACGTTCTAGAAGAAACCGTAAA
TTATATGAAAGTGAATAGAAAGTCAGAACAACGATTGTTAAAGACACTGCAATACCCCTTAATACTAGTTTCTATTTTTA
TTGCTATGATTATTATATTAAACCTCACAGTAATTCCACAGTTTCAACAATTATATACTTCTATGAATATTCAACTATCT
TCTTTTCAAAAAACATTGTCTTTTTTCATTACCAGCTTACCTACTATAATTGTAGTAATGCTCATAATAGTATCTATGTT
GGCTATTATTATGAAATTAATTTATAACAATTTAAATATGCTCAATAAGATAAACTTTGTGATGAAACTACCGCTAATAT
CAGGCTATTTCCAATTATTTAAAACTTATTTTGTAACTAATGAATTAGTGTTGTTTTATAAAAATGGTATTACACTTCAA
TCAATAGTAGACGTTTATATTAACCATAGTAGTGATCCATTTAGACAGTTTCTAGGTAAATACTTATTAACTTATTCAGA
AATGGGATATGGTTTGCCTCAAATTTTAGAAAAACTAAAATGCTTTAAGCCTCAATTAATTAAGTTTGTGCTACAAGGTG
AAAAGAGAGGGAAGCTAGAAGTAGAACTAAAGTTATATTCGCAAATATTAGTAAAACAAATAGAAGATAAAGCGATAAAA
CAGACTCAGTTTTTACAGCCTATTTTATTTTTGATTTTAGGTTTATTTATTGTCGCAATTTATTTAGTAATTATGTTACC
GATGTTTCAAATGATGCAAAGTATAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(227-347)

Type II secretion system (T2SS), protein F (T2SSF)

(27-146)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Staphylococcus aureus MW2

99.438

100

0.994
  comGB Staphylococcus aureus N315

99.438

100

0.994