Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   R4710_RS08620 Genome accession   NZ_CP137101
Coordinates   1633463..1633729 (+) Length   88 a.a.
NCBI ID   WP_001820593.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 16P2012-2     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1628463..1638729
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4710_RS08600 - 1628675..1629184 (+) 510 WP_000619941.1 N-acetyltransferase -
  R4710_RS08605 pheT 1629261..1631666 (+) 2406 WP_317804540.1 phenylalanine--tRNA ligase subunit beta -
  R4710_RS08610 - 1631734..1632735 (-) 1002 WP_000597971.1 endonuclease/exonuclease/phosphatase family protein -
  R4710_RS08615 - 1632891..1633379 (+) 489 Protein_1660 transposase -
  R4710_RS08620 HI0659 1633463..1633729 (+) 267 WP_001820593.1 helix-turn-helix domain-containing protein Machinery gene
  R4710_RS08625 metE 1633990..1636239 (+) 2250 WP_044812083.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  R4710_RS08630 metF 1636303..1637169 (+) 867 WP_000089983.1 methylenetetrahydrofolate reductase [NAD(P)H] -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 9670.12 Da        Isoelectric Point: 4.3934

>NTDB_id=818607 R4710_RS08620 WP_001820593.1 1633463..1633729(+) (HI0659) [Streptococcus pneumoniae strain 16P2012-2]
MEGCPSELFSKEEILESDMRVAIMSELIEARHEQGINQRKLEELSGVSQPVIARMETGESSLQLDTVLKVLTSLGKTLAV
VPLEQGKS

Nucleotide


Download         Length: 267 bp        

>NTDB_id=818607 R4710_RS08620 WP_001820593.1 1633463..1633729(+) (HI0659) [Streptococcus pneumoniae strain 16P2012-2]
TTGGAAGGATGTCCATCTGAGCTCTTTAGCAAGGAGGAAATCCTTGAAAGTGATATGCGAGTGGCTATTATGAGCGAGTT
GATTGAAGCTAGACATGAACAAGGAATCAATCAGAGAAAGCTAGAAGAACTCAGTGGAGTGAGTCAACCTGTCATAGCTA
GGATGGAAACAGGAGAGAGCAGTCTTCAGTTGGATACGGTCTTAAAAGTTCTAACCAGTCTAGGAAAGACACTAGCAGTC
GTTCCACTTGAACAGGGGAAAAGTTGA

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(28-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

55.844

87.5

0.489