Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   R4710_RS07710 Genome accession   NZ_CP137101
Coordinates   1456465..1457061 (-) Length   198 a.a.
NCBI ID   WP_000248787.1    Uniprot ID   H8ZYP5
Organism   Streptococcus pneumoniae strain 16P2012-2     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1451465..1462061
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4710_RS07705 pbp1a 1454309..1456468 (-) 2160 WP_317804429.1 penicillin-binding protein PBP1A -
  R4710_RS07710 recU 1456465..1457061 (-) 597 WP_000248787.1 Holliday junction resolvase RecU Machinery gene
  R4710_RS07715 - 1457127..1457654 (+) 528 WP_000179549.1 DUF1273 domain-containing protein -
  R4710_RS07720 gpsB 1457724..1458053 (+) 330 WP_000146522.1 cell division regulator GpsB -
  R4710_RS07730 - 1458539..1459696 (+) 1158 WP_000711385.1 class I SAM-dependent RNA methyltransferase -
  R4710_RS07735 mapZ 1459709..1461103 (+) 1395 WP_061747125.1 mid-cell-anchored protein MapZ -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 23130.53 Da        Isoelectric Point: 9.8515

>NTDB_id=818596 R4710_RS07710 WP_000248787.1 1456465..1457061(-) (recU) [Streptococcus pneumoniae strain 16P2012-2]
MVNYPHKVSSQKRQTSLSQPKNFANRGMSFEKMINATNDYYLSQGLAVIHKKPTPIQIVQVDYPQRSRAKIVEAYFRQAS
TTDYSGVYNGYYIDFEVKETKQKRAIPMKNFHPHQIQHMEQVLAQQGICFVLLHFSSQQETYLLPAFDLIRFYHQDKGQK
SMPLEYIREYGYEIKAGAFPQIPYLNVIKEHLLGGKTR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=818596 R4710_RS07710 WP_000248787.1 1456465..1457061(-) (recU) [Streptococcus pneumoniae strain 16P2012-2]
ATGGTCAACTATCCACATAAAGTTTCATCACAAAAAAGACAAACATCTCTTTCTCAACCCAAAAATTTCGCAAATCGAGG
AATGTCTTTTGAAAAGATGATCAATGCTACCAACGACTACTATTTGTCTCAGGGCTTGGCTGTTATACATAAGAAACCAA
CTCCTATTCAAATCGTACAAGTGGACTATCCACAACGAAGTCGTGCCAAGATTGTTGAAGCCTATTTTCGACAAGCTTCA
ACGACGGACTATTCTGGCGTTTATAATGGATATTACATCGACTTTGAAGTCAAGGAAACAAAACAAAAACGTGCGATTCC
GATGAAAAATTTTCATCCACATCAGATTCAGCATATGGAACAAGTCCTTGCCCAACAAGGAATCTGCTTTGTCCTTCTTC
ACTTTTCTTCTCAGCAAGAAACCTACTTATTGCCGGCATTCGATTTGATTCGCTTCTATCATCAAGATAAGGGACAAAAA
TCAATGCCACTTGAATATATTCGAGAATATGGATATGAAATCAAGGCTGGTGCCTTCCCTCAAATTCCTTATCTCAATGT
TATCAAAGAACATTTATTAGGTGGTAAAACAAGATGA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(26-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB H8ZYP5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

48.5

100

0.49