Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR   Type   Regulator
Locus tag   R4710_RS06155 Genome accession   NZ_CP137101
Coordinates   1149872..1150765 (+) Length   297 a.a.
NCBI ID   WP_000343888.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 16P2012-2     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1144872..1155765
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4710_RS06115 - 1145185..1146354 (+) 1170 WP_317804245.1 pyridoxal phosphate-dependent aminotransferase -
  R4710_RS06120 recO 1146351..1147121 (+) 771 WP_000616164.1 DNA repair protein RecO Machinery gene
  R4710_RS06125 plsX 1147118..1148110 (+) 993 WP_000717456.1 phosphate acyltransferase PlsX -
  R4710_RS06130 - 1148116..1148349 (+) 234 WP_000136447.1 acyl carrier protein -
  R4710_RS06135 - 1148386..1148685 (+) 300 Protein_1162 transposase family protein -
  R4710_RS06140 blpU 1148888..1149118 (+) 231 WP_001093075.1 bacteriocin-like peptide BlpU -
  R4710_RS06145 - 1149121..1149246 (+) 126 WP_000346297.1 PncF family bacteriocin immunity protein -
  R4710_RS06150 - 1149657..1149851 (+) 195 WP_000756776.1 hypothetical protein -
  R4710_RS06155 comR 1149872..1150765 (+) 894 WP_000343888.1 XRE family transcriptional regulator Regulator
  R4710_RS06160 - 1151295..1151591 (+) 297 WP_000837726.1 uberolysin/carnocyclin family circular bacteriocin -
  R4710_RS06165 - 1151598..1152734 (+) 1137 WP_000698828.1 hypothetical protein -
  R4710_RS06170 - 1152731..1153213 (+) 483 WP_001232094.1 stage II sporulation protein M -
  R4710_RS06175 - 1153210..1153806 (+) 597 WP_000687787.1 ATP-binding cassette domain-containing protein -
  R4710_RS06180 - 1153787..1154278 (+) 492 WP_000671990.1 hypothetical protein -

Sequence

Protein


Download         Length: 297 a.a.        Molecular weight: 34517.01 Da        Isoelectric Point: 4.6498

>NTDB_id=818585 R4710_RS06155 WP_000343888.1 1149872..1150765(+) (comR) [Streptococcus pneumoniae strain 16P2012-2]
MDELKREIGYKIKTIRRSCGKTQIDICGDESELTIRQLARIENGQALATLPKLLLIADKLGVSLQNIVDVKVIEIPKGFL
KLKDELIHSQTYADKGRIERKEAILEEIYENYYENLPEEEQLIVDVTQARFDIYGSSDVTYGLGLVEEYFQQLLKKKYFS
VNDLLIIELYFFCCAMGLEDKEHFEELAQKVLLCSEYEDKASLVQMEKVLLSLFIQIQTEDSLIYIQTFEKIIAKTRHVF
YRPHLFLLKAKYALFVDKNILEAESFYEKAISLAELLDDQVLVQRILAEKQIDFPTT

Nucleotide


Download         Length: 894 bp        

>NTDB_id=818585 R4710_RS06155 WP_000343888.1 1149872..1150765(+) (comR) [Streptococcus pneumoniae strain 16P2012-2]
ATGGATGAGTTGAAACGTGAAATTGGTTATAAAATCAAAACTATTAGGCGATCTTGTGGAAAAACTCAGATAGATATTTG
TGGTGATGAATCAGAGTTGACGATTCGTCAGCTAGCACGTATTGAAAATGGGCAAGCTTTAGCAACACTTCCTAAATTAT
TATTGATTGCGGATAAACTTGGAGTATCATTACAGAATATTGTGGATGTTAAGGTTATAGAGATTCCAAAAGGATTCCTA
AAACTCAAAGATGAGCTGATTCATTCTCAAACCTACGCTGATAAGGGAAGAATCGAACGAAAAGAAGCTATACTTGAGGA
AATATATGAAAACTATTATGAGAATTTGCCTGAGGAAGAGCAGTTAATTGTGGATGTGACACAAGCTCGTTTTGATATTT
ATGGTAGTTCAGATGTGACCTACGGTTTAGGGTTAGTGGAAGAATATTTCCAGCAGTTATTAAAAAAGAAATATTTTTCT
GTAAATGATTTGTTGATTATTGAATTGTATTTCTTTTGTTGTGCTATGGGATTAGAAGATAAAGAACATTTTGAGGAGTT
AGCTCAAAAAGTATTGCTATGTTCAGAATATGAAGATAAGGCTAGCCTAGTTCAAATGGAAAAAGTTCTTCTGAGCCTAT
TTATCCAAATTCAGACAGAAGATAGTCTGATATATATTCAAACATTTGAGAAAATTATTGCTAAAACAAGACATGTTTTT
TACCGACCTCATCTATTTTTGCTAAAGGCAAAATATGCTTTATTTGTAGACAAGAATATTTTAGAGGCAGAAAGTTTCTA
TGAAAAGGCGATTTCTCTAGCAGAATTGCTAGACGATCAGGTATTAGTTCAGAGAATTTTAGCAGAAAAACAGATAGATT
TCCCAACAACCTGA

Domains

Predicted by InterProScan.

ComR tetratricopeptide (ComR_TPR)

(76-289)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR Streptococcus mutans UA159

36.667

100

0.37