Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   R4703_RS08855 Genome accession   NZ_CP137100
Coordinates   1631826..1632092 (+) Length   88 a.a.
NCBI ID   WP_001814186.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain LYP     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1626826..1637092
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4703_RS08835 - 1627038..1627547 (+) 510 WP_000619941.1 N-acetyltransferase -
  R4703_RS08840 pheT 1627624..1630029 (+) 2406 WP_050200295.1 phenylalanine--tRNA ligase subunit beta -
  R4703_RS08845 - 1630097..1631098 (-) 1002 WP_000597973.1 endonuclease/exonuclease/phosphatase family protein -
  R4703_RS08850 - 1631254..1631742 (+) 489 Protein_1700 transposase -
  R4703_RS08855 HI0659 1631826..1632092 (+) 267 WP_001814186.1 helix-turn-helix domain-containing protein Machinery gene
  R4703_RS08860 metE 1632353..1634602 (+) 2250 WP_000108221.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  R4703_RS08865 metF 1634666..1635532 (+) 867 WP_001277841.1 methylenetetrahydrofolate reductase [NAD(P)H] -
  R4703_RS11745 - 1635714..1635983 (-) 270 WP_001808932.1 hypothetical protein -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 9641.11 Da        Isoelectric Point: 4.2720

>NTDB_id=818486 R4703_RS08855 WP_001814186.1 1631826..1632092(+) (HI0659) [Streptococcus pneumoniae strain LYP]
MEGCPSELFSKEEILESDMRVAIMSELIEARYEQGISQKKLEEVSGISQPVIARMETGESSLQLDTVLKVLTSLGKTLAV
VPLEQGKS

Nucleotide


Download         Length: 267 bp        

>NTDB_id=818486 R4703_RS08855 WP_001814186.1 1631826..1632092(+) (HI0659) [Streptococcus pneumoniae strain LYP]
TTGGAAGGATGTCCATCTGAGCTCTTTAGCAAGGAGGAAATCCTTGAAAGTGATATGCGAGTGGCTATCATGAGCGAGTT
GATTGAGGCTAGGTATGAACAAGGAATCAGTCAGAAAAAGCTGGAAGAAGTCAGTGGAATAAGCCAGCCTGTCATAGCTA
GGATGGAGACAGGAGAGAGCAGTCTTCAGTTGGATACGGTCTTAAAAGTTCTAACCAGTCTAGGAAAGACACTAGCAGTC
GTTCCACTTGAACAGGGGAAAAGTTGA

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(29-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

55.844

87.5

0.489