Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   QAY68_RS07705 Genome accession   NZ_CP123084
Coordinates   1590734..1591180 (-) Length   148 a.a.
NCBI ID   WP_001788899.1    Uniprot ID   -
Organism   Staphylococcus aureus strain MSSA-JAR     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1585734..1596180
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAY68_RS07675 (QAY68_07665) gcvPA 1586660..1588006 (-) 1347 WP_000019689.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  QAY68_RS07680 (QAY68_07670) gcvT 1588026..1589117 (-) 1092 WP_411888523.1 glycine cleavage system aminomethyltransferase GcvT -
  QAY68_RS07685 (QAY68_07675) - 1589276..1589800 (-) 525 WP_001015123.1 shikimate kinase -
  QAY68_RS07690 (QAY68_07680) - 1589790..1589936 (-) 147 WP_001789879.1 hypothetical protein -
  QAY68_RS07695 (QAY68_07685) comGF 1590033..1590530 (-) 498 WP_029642894.1 competence type IV pilus minor pilin ComGF Machinery gene
  QAY68_RS07700 (QAY68_07690) comGE 1590448..1590747 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  QAY68_RS07705 (QAY68_07695) comGD 1590734..1591180 (-) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  QAY68_RS07710 (QAY68_07700) comGC 1591158..1591469 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  QAY68_RS07715 (QAY68_07705) comGB 1591483..1592553 (-) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  QAY68_RS07720 (QAY68_07710) comGA 1592525..1593499 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  QAY68_RS07725 (QAY68_07715) - 1593524..1595170 (-) 1647 WP_000277718.1 IS1182 family transposase -
  QAY68_RS07730 (QAY68_07720) - 1595465..1596088 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17165.33 Da        Isoelectric Point: 10.3312

>NTDB_id=818388 QAY68_RS07705 WP_001788899.1 1590734..1591180(-) (comGD) [Staphylococcus aureus strain MSSA-JAR]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=818388 QAY68_RS07705 WP_001788899.1 1590734..1591180(-) (comGD) [Staphylococcus aureus strain MSSA-JAR]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGTATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

100

100

1
  comGD Staphylococcus aureus N315

100

100

1