Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   R4714_RS05975 Genome accession   NZ_CP137099
Coordinates   1098789..1099559 (+) Length   256 a.a.
NCBI ID   WP_000616157.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 20824-4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1093789..1104559
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4714_RS05960 - 1095844..1096281 (+) 438 WP_000076479.1 CoA-binding protein -
  R4714_RS05965 - 1096464..1097474 (-) 1011 WP_000009157.1 YeiH family protein -
  R4714_RS05970 - 1097623..1098792 (+) 1170 WP_000366343.1 pyridoxal phosphate-dependent aminotransferase -
  R4714_RS05975 recO 1098789..1099559 (+) 771 WP_000616157.1 DNA repair protein RecO Machinery gene
  R4714_RS05980 plsX 1099556..1100548 (+) 993 WP_000717457.1 phosphate acyltransferase PlsX -
  R4714_RS05985 - 1100554..1100787 (+) 234 WP_000659556.1 acyl carrier protein -
  R4714_RS05990 - 1100824..1101124 (+) 301 Protein_1126 transposase family protein -
  R4714_RS05995 blpU 1101327..1101557 (+) 231 Protein_1127 bacteriocin-like peptide BlpU -
  R4714_RS06000 - 1101560..1101685 (+) 126 WP_000346297.1 PncF family bacteriocin immunity protein -
  R4714_RS06005 comA 1102272..1104425 (+) 2154 WP_000668280.1 peptide cleavage/export ABC transporter ComA Regulator

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29735.24 Da        Isoelectric Point: 5.1580

>NTDB_id=818342 R4714_RS05975 WP_000616157.1 1098789..1099559(+) (recO) [Streptococcus pneumoniae strain 20824-4]
MIQSITSQGLVLYNRNFREDDKLVKIFTEQVGKCMFFVKHAGQSKLAPVIQPLVLARFLLRINDDGLSYIEDYHEVMTFP
KINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLQKTLELMEAGLDYQVLTNIFEIQILTRFGISLNFNECVFCHRVG
QAFDFSFKYGACLCPEHYHEDERRCHLNPNIPYLLNQFQAIDFETLETISLKPGIKQELRQFMDQLYEEYVGIHLKSKKF
IDSLADWGQLLKEEKK

Nucleotide


Download         Length: 771 bp        

>NTDB_id=818342 R4714_RS05975 WP_000616157.1 1098789..1099559(+) (recO) [Streptococcus pneumoniae strain 20824-4]
ATGATTCAGTCTATCACGAGTCAAGGCTTGGTGCTTTACAATCGCAATTTTCGTGAGGATGACAAGCTTGTCAAAATTTT
TACAGAGCAGGTTGGCAAATGCATGTTTTTTGTCAAACACGCTGGTCAGTCTAAGCTGGCGCCTGTTATTCAGCCCTTGG
TGCTGGCACGATTTCTCTTGCGAATCAATGATGACGGACTCAGTTACATCGAAGACTATCATGAGGTCATGACTTTTCCC
AAGATTAATAGTGACCTCTTTGTCATGGCCTATGCGACCTATGTGGCAGCTCTTGCAGATGCTAGTTTGCAGGACAATCA
GCAGGATGCTCCCTTGTTTGCTTTTTTGCAAAAGACTTTGGAGTTGATGGAAGCAGGCTTGGATTATCAGGTTTTGACCA
ATATTTTTGAAATTCAAATTTTGACTCGATTTGGAATCAGCCTCAATTTTAATGAGTGTGTCTTCTGCCATCGGGTTGGT
CAGGCTTTTGACTTTTCTTTCAAATATGGAGCCTGTCTCTGTCCAGAGCATTATCATGAGGATGAGAGACGTTGCCATCT
CAATCCCAATATCCCCTATCTGCTCAATCAATTTCAAGCTATTGATTTTGAGACTTTGGAGACCATTTCGCTCAAGCCTG
GAATCAAGCAAGAGCTACGCCAATTTATGGATCAACTATATGAAGAGTACGTTGGGATTCACCTAAAATCAAAGAAATTT
ATTGATTCCCTAGCAGACTGGGGACAATTACTAAAAGAGGAAAAGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(4-72)

Recombination protein O C terminal (RecO_C)

(84-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

99.219

100

0.992