Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   R8619_RS05335 Genome accession   NZ_AP026918
Coordinates   1049887..1050957 (+) Length   356 a.a.
NCBI ID   WP_000817878.1    Uniprot ID   C1CKQ9
Organism   Streptococcus pneumoniae strain PZ900700009     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1044887..1055957
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8619_RS05320 (PC0009_10420) ylqF 1046120..1046971 (+) 852 WP_000201299.1 ribosome biogenesis GTPase YlqF -
  R8619_RS05325 (PC0009_10430) - 1046958..1047737 (+) 780 WP_219565383.1 ribonuclease HII -
  R8619_RS05330 (PC0009_10440) - 1047753..1049303 (+) 1551 WP_050201909.1 ClC family H(+)/Cl(-) exchange transporter -
  R8619_RS05335 (PC0009_10450) xerS 1049887..1050957 (+) 1071 WP_000817878.1 tyrosine recombinase XerS Machinery gene
  R8619_RS05340 (PC0009_10460) - 1051030..1052019 (-) 990 WP_000873986.1 lipoate--protein ligase -
  R8619_RS05345 (PC0009_10470) lpdA 1052083..1053786 (-) 1704 WP_001162948.1 dihydrolipoyl dehydrogenase -
  R8619_RS05350 (PC0009_10480) - 1053832..1054875 (-) 1044 WP_000752695.1 dihydrolipoamide acetyltransferase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41113.17 Da        Isoelectric Point: 9.6949

>NTDB_id=81833 R8619_RS05335 WP_000817878.1 1049887..1050957(+) (xerS) [Streptococcus pneumoniae strain PZ900700009]
MKREILLERIDKLKQLMPWYVLEYYQSKLAVPYSFTTLYEYLKEYDRFFSWVLESGISNADKISDIPLSVLENMSKKDME
SFILYLRERPLLNANTTKQGVSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAARAENIKQK
LFLGDETAGFLTYIDQEHPQQLSNRALSSFNKNKERDLAIIALLLASGVRLSEAVNLDLRDLNLKMMVIDVTRKGGKRDS
VNVAAFAKPYLENYLAIRNQRYKTEKTDTALFLTLYRGVPNRIDASSVEKMVAKYSEDFKVRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDSL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=81833 R8619_RS05335 WP_000817878.1 1049887..1050957(+) (xerS) [Streptococcus pneumoniae strain PZ900700009]
ATGAAACGTGAGATTTTACTGGAACGAATTGACAAACTAAAACAACTCATGCCCTGGTATGTTCTGGAATACTACCAATC
TAAGCTGGCTGTGCCCTACAGTTTTACAACCCTGTACGAATACCTTAAGGAATATGACCGATTTTTCAGCTGGGTTTTGG
AGTCTGGTATTTCAAACGCTGATAAAATATCCGATATTCCTTTATCAGTTTTGGAAAATATGTCTAAGAAAGACATGGAA
TCCTTTATCCTTTATCTACGTGAACGTCCCTTGCTGAATGCTAATACAACAAAACAAGGTGTTTCACAGACAACTATCAA
TCGAACCTTATCAGCACTTTCTAGTCTTTACAAGTATCTAACCGAGGAGGTTGAAAATGATCAGGGGGAACCTTATTTCT
ATCGTAATGTAATGAAAAAAGTTTCAACCAAGAAAAAGAAAGAAACCCTTGCTGCCAGAGCTGAAAATATCAAGCAAAAA
CTCTTTCTAGGTGATGAAACAGCAGGTTTTCTAACTTATATCGATCAAGAGCACCCACAACAGCTTTCAAATCGAGCTCT
CTCATCATTCAACAAAAATAAAGAACGAGATTTAGCCATTATTGCCCTTCTCTTGGCATCTGGTGTTCGCTTATCTGAAG
CTGTTAATCTAGATCTAAGAGATCTCAATCTAAAAATGATGGTTATTGATGTTACTCGAAAAGGTGGCAAACGTGACTCA
GTCAATGTCGCTGCTTTTGCTAAACCTTATTTAGAGAATTATCTGGCCATTCGGAATCAACGCTATAAAACGGAAAAAAC
AGATACAGCCCTTTTTTTAACTCTCTACAGAGGTGTTCCTAATCGTATCGATGCTTCTAGCGTTGAGAAAATGGTTGCTA
AATACTCAGAGGATTTTAAAGTGCGTGTAACACCCCATAAACTGCGCCATACACTAGCAACTAGGCTCTATGATGCAACT
AAATCACAAGTTTTAGTCAGTCACCAACTAGGACATGCTAGCACACAAGTCACTGACCTCTATACCCATATTGTTAATGA
TGAACAAAAGAATGCTCTAGATAGTTTATAA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(188-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_1)

(71-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C1CKQ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

99.719

100

0.997

Multiple sequence alignment