Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   R8619_RS05215 Genome accession   NZ_AP026918
Coordinates   1011678..1014953 (+) Length   1091 a.a.
NCBI ID   WP_054384407.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900700009     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1006678..1019953
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8619_RS05185 (PC0009_10170) - 1006796..1007911 (+) 1116 WP_000706423.1 glycerate kinase -
  R8619_RS05190 (PC0009_10180) - 1007908..1008354 (-) 447 WP_000131076.1 YueI family protein -
  R8619_RS05195 (PC0009_10190) eno 1008518..1009822 (+) 1305 WP_000022813.1 surface-displayed alpha-enolase -
  R8619_RS05200 - 1009960..1010406 (-) 447 WP_308300787.1 tyrosine-type recombinase/integrase -
  R8619_RS05205 - 1010306..1011152 (-) 847 Protein_1027 IS630 family transposase -
  R8619_RS05210 - 1011323..1011478 (+) 156 Protein_1028 diacylglycerol kinase family lipid kinase -
  R8619_RS05215 (PC0009_10210) rexB 1011678..1014953 (+) 3276 WP_054384407.1 ATP-dependent nuclease subunit B Machinery gene
  R8619_RS05220 (PC0009_10220) rexA 1014950..1018600 (+) 3651 WP_000767250.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  R8619_RS05225 - 1018562..1018774 (-) 213 WP_078139545.1 hypothetical protein -

Sequence

Protein


Download         Length: 1091 a.a.        Molecular weight: 124806.63 Da        Isoelectric Point: 5.7504

>NTDB_id=81831 R8619_RS05215 WP_054384407.1 1011678..1014953(+) (rexB) [Streptococcus pneumoniae strain PZ900700009]
MKLLYTDIRTSLTEILTREAEELVAAGKRVFYIAPNSLSFEKERAVLECLSQQASFSITVTRFAQMARYLVLNDLPAKTT
LDDIGLGLAFYKCLAELDPKDLRVYGAIKQDPQLIQQLIELYHEMTKSQMNFLDLENLTDEDKRADLLLIFEKVTAYLNQ
GQLAQGSQLSHLIEAIENDKISSDFNQIALVIDGFTRFSAEEERVVDLLHGKGVEIVIGAYASKKAYTSPFSEGNLYQAS
VKFLHHLASKYQTPAQDCSQTHEKMDSFDKASRLLESSYDFSELALDVDEKDRENLQIWSCLTQKEELELVARSIRQKLH
ENSDLSYKHFRILLGDVASYQLSLKTIFDQYQIPFYLGRSEAMAHHPLTQFVESILALKRYRFRQEDLTNLLRTDLYTDL
SQSDIDAFEQYIRYLGINGLPAFQQTFTKSHHGKFNLERLNVLRLRILAPLETLFASRKQKAENLLQKWNVFLKEGVVTK
QLQDLTATMEAIEQERQAEVWKAFCHVLEQFATVFAGSQISLEDFLALLHSGMSLSQYRTIPATVDTVLVQSYDLIAPLT
ADFVYAIGLTQDNLPKIAQNTSLLTDEERQNINQATEEGVQLLIASSENLKKNRYTMLSLVNSARKQLVLSAPSLFNESE
SKESAYLQELVHLGFSRKEKRMNHKRLSKEDMGSYHSLLSSLVAYHQQGETSDTEQDLTFVKVLARVMGKKLDQQGLENP
ALPTSPSSKQLTKDTLQALYPAEQEFYLSTSGLTEFYRNEYSYFLRYVLGLQEELRLRPDARSHGNFLHRIFERALQLPN
EDSFDQRLEQAIQETSQEREFEAIYQESLEAQFTKEVLLDVARTTGHILRHNPAIETIKEEANFGGKDQAFIQLDNGRSV
FVRGKVDRIDRLKANGAIGVVDYKSSLTQFQFPHFFNGLNSQLPTYLAALKREGEQNFFGAMYLEMAEPVQSLMAVKSLA
GAVVEASKSMKYQGLFLEKENSYLGEFYNKNKANQLTDEEFQLLLDYNAYLYKKAAEKILAGRFAINPYTENGRSIAPYV
QQHQAITGFEANYHLGQARFLKKLDLADGKRLVGEKLKQAWFEKIREELNR

Nucleotide


Download         Length: 3276 bp        

>NTDB_id=81831 R8619_RS05215 WP_054384407.1 1011678..1014953(+) (rexB) [Streptococcus pneumoniae strain PZ900700009]
ATGAAATTACTTTATACTGATATTCGAACTTCTTTGACAGAAATTCTAACAAGAGAGGCAGAAGAGCTAGTTGCAGCTGG
CAAGCGGGTCTTCTACATTGCCCCCAACTCTCTTTCTTTTGAAAAGGAACGCGCCGTGCTGGAATGCTTGTCCCAGCAGG
CTTCTTTTTCGATTACCGTCACGCGCTTTGCTCAAATGGCTCGTTATCTGGTCTTGAATGATTTACCAGCTAAAACTACT
CTTGATGATATCGGTCTTGGGTTGGCCTTTTACAAATGCCTTGCCGAACTCGATCCCAAGGACTTGCGTGTTTATGGCGC
TATTAAGCAGGATCCTCAATTGATCCAGCAGTTAATTGAGCTTTACCATGAGATGACCAAATCTCAGATGAATTTTTTGG
ACTTGGAGAATTTAACAGATGAGGATAAGAGGGCGGATTTACTCTTGATTTTTGAGAAAGTAACAGCCTATCTTAATCAA
GGTCAGTTAGCCCAGGGAAGTCAGTTGTCCCATTTGATTGAGGCTATTGAGAATGACAAGATAAGTAGTGATTTTAATCA
AATCGCCTTGGTCATTGACGGCTTTACTCGTTTTTCTGCTGAGGAAGAGCGGGTTGTGGACTTACTTCACGGCAAAGGTG
TTGAGATTGTTATCGGGGCTTATGCTAGTAAGAAAGCCTATACCAGTCCTTTTAGCGAGGGCAATCTCTACCAAGCCAGC
GTAAAATTTCTCCATCATCTGGCTTCTAAATACCAAACGCCTGCTCAGGACTGTTCTCAAACCCATGAGAAGATGGATAG
TTTTGACAAGGCCTCTCGTTTGTTGGAGTCTTCTTATGACTTTTCAGAACTCGCTTTGGATGTCGATGAGAAAGACCGTG
AAAATTTACAAATCTGGTCTTGTTTGACGCAAAAGGAGGAGTTGGAGCTAGTAGCCCGTAGTATTCGTCAGAAATTACAT
GAGAACTCAGACCTGAGCTACAAGCATTTTCGTATTCTCTTGGGGGATGTAGCTTCTTACCAGTTATCTCTCAAAACCAT
TTTTGACCAGTATCAGATTCCTTTTTATCTTGGTAGAAGCGAAGCCATGGCTCATCATCCCTTGACTCAGTTTGTCGAGT
CTATTTTAGCTTTAAAACGTTACCGTTTTCGTCAGGAGGATTTGACTAATCTTCTTAGAACTGATTTGTATACTGACCTC
AGTCAGTCTGATATTGATGCTTTTGAGCAATATATCCGCTATCTTGGTATCAATGGCTTGCCAGCCTTTCAGCAAACCTT
CACCAAATCCCACCATGGAAAATTTAATCTTGAGCGTTTGAATGTCCTCCGTCTGAGAATTTTAGCACCTCTTGAAACCC
TCTTTGCTAGCCGAAAACAAAAGGCCGAAAATCTCTTGCAAAAGTGGAATGTCTTTCTAAAAGAAGGAGTGGTGACCAAG
CAGTTACAAGATTTGACAGCCACTATGGAAGCTATAGAACAGGAAAGACAAGCCGAGGTTTGGAAGGCATTCTGTCATGT
TTTAGAACAATTTGCGACTGTTTTTGCTGGTTCACAGATTAGTCTAGAGGACTTCCTAGCCTTGCTCCATTCTGGAATGA
GTTTGTCTCAGTATCGCACTATTCCAGCGACAGTGGACACCGTTCTGGTGCAGAGTTACGATTTGATTGCGCCTTTGACT
GCTGACTTTGTCTACGCCATTGGGCTAACTCAGGACAATTTACCAAAAATCGCGCAAAATACCAGTCTTTTGACAGATGA
AGAAAGACAAAACATAAACCAAGCGACCGAAGAAGGCGTTCAATTACTGATTGCCAGCAGTGAAAATCTCAAGAAAAATC
GCTACACTATGCTTTCTTTGGTCAATTCTGCCCGTAAGCAATTAGTTTTGTCGGCTCCAAGCCTTTTTAATGAAAGTGAA
AGCAAGGAGTCAGCCTATCTTCAAGAGTTGGTCCATTTGGGATTTAGTCGAAAAGAGAAGAGGATGAATCACAAAAGGCT
GTCTAAGGAAGATATGGGATCCTATCACAGTCTTTTGTCCAGTCTGGTTGCCTATCACCAGCAGGGCGAGACGAGTGATA
CTGAGCAAGATTTGACCTTTGTCAAGGTTCTGGCGCGTGTGATGGGTAAAAAACTAGACCAGCAAGGTTTGGAAAATCCT
GCCCTTCCAACCAGTCCAAGCAGTAAGCAGTTGACCAAAGATACCTTACAAGCTCTCTATCCTGCTGAACAGGAATTTTA
CCTGTCTACGTCGGGTTTGACAGAGTTTTATCGCAATGAATACAGTTATTTCCTACGCTACGTTTTAGGCTTGCAGGAGG
AATTACGTTTGCGTCCTGATGCCCGTAGTCACGGGAATTTCTTGCATCGTATCTTTGAACGCGCCTTACAGTTGCCTAAT
GAAGATTCCTTTGACCAACGTCTAGAACAAGCTATTCAAGAAACCAGTCAAGAACGCGAATTTGAAGCTATTTATCAAGA
AAGTTTGGAAGCCCAGTTTACCAAGGAAGTTTTGCTTGATGTTGCACGGACGACTGGACATATTCTCCGACACAATCCAG
CCATCGAAACCATCAAAGAAGAAGCAAATTTTGGTGGAAAAGACCAAGCCTTTATTCAATTAGACAATGGACGCAGTGTC
TTTGTACGAGGCAAGGTGGACCGGATTGACCGTTTGAAAGCTAATGGAGCGATAGGAGTAGTAGACTACAAATCCAGTCT
GACTCAGTTCCAGTTTCCTCATTTCTTTAATGGGCTCAATTCTCAGTTACCAACCTATCTTGCTGCCCTAAAAAGAGAAG
GGGAGCAGAACTTTTTCGGCGCCATGTACTTGGAAATGGCTGAACCTGTCCAATCTCTGATGGCGGTAAAAAGTCTGGCA
GGAGCAGTGGTAGAAGCCAGCAAATCTATGAAATACCAAGGGCTCTTCTTGGAAAAAGAAAACAGTTATTTAGGCGAATT
TTATAACAAAAACAAGGCTAATCAACTGACAGATGAGGAATTTCAGCTCCTACTGGACTACAATGCCTATCTTTACAAGA
AAGCTGCTGAGAAGATTTTAGCAGGCCGGTTCGCCATCAATCCTTATACTGAAAATGGCAGAAGCATTGCCCCATACGTC
CAGCAACATCAGGCTATTACAGGCTTTGAAGCCAATTACCATCTGGGCCAAGCCCGTTTCCTAAAAAAGTTGGACCTAGC
TGATGGCAAGCGTCTGGTCGGAGAAAAACTCAAGCAAGCTTGGTTTGAAAAAATAAGAGAGGAGTTAAATCGATGA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(748-1030)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

97.159

100

0.972

Multiple sequence alignment